example_snp_detection
- /doc.zih.tu-dresden.de/docs/example_workflow/overview.md
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/available_filesystems.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/base_environment.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/first_login_keys.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/login_notification.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/login_password.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/login_via_ssh_powershell.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/miniforge_installed.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/overview_cluster_basic.png
- /doc.zih.tu-dresden.de/docs/example_workflow/misc/powershell_open.jpg
- /doc.zih.tu-dresden.de/docs/example_workflow/snp_detection.md
- /doc.zih.tu-dresden.de/mkdocs.yml
Merge request reports
Activity
requested review from @brunst--tu-dresden.de
assigned to @nabr600f-at-tu-dresden.de
assigned to @mflehmig--tu-dresden.de and unassigned @nabr600f-at-tu-dresden.de
@nabr600f-at-tu-dresden.de Du hast nicht die nötigen Rechte, um auf "merge" zu drücken. Daher habe ich mir erlaubt, mich als Assignee einzutragen.
mentioned in issue #639 (closed)
added 1 commit
- b85a1dcd - Revert "Example usage of syntax to scale graphics"
- Resolved by Holger Brunst
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What about altered links like: at a ZIH datashare repository -> from this ZIH repository. follow the instructions here and here -> follow the instructions at 1 and 2
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Where and when would I need the command configuration at the end of section 1 ? Looks like a local Windows box to me. Is this self explaining to a typical biologist. Nothing I understand / can reproduce... Guess this is related to some local software on a biologist machine?
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Do I really need all information in section 2? I would hope that we explained this somewhere else in the compendium.
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The Power-Shell Screen shots in section 4 are somewhat blurry. I cannot read them. Should I? Were they downsized?
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To me, Power-Shell is just a shell among others. I assume that biologist use them a lot. Therefore, one example screen should could do? Would it make sense to provide the command examples as ordinary text like we do for all command line commands?
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- Why would I need the reference of ws_allocate if the section "Creating a workspace" is referenced at the very beginning?
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boxes with interactive command line examples do not have comments "# list the available file systems" from my point of view. Their explanation is either above or below the box in "normal" text.
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- why is (base) missing in the boxes with command line examples?
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I don't see a need for the screen shots... Command line input and output to me works well in the fixed font boxes. I understand that screenshots are common in step by step guides. Yet, in this case it is a mixture of both, which I do not find (more) intuitive. Not talking about maintaining the screen shots... but that's of course a bad excuse. ;-)
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Reference to virtual environments in compendium is missing
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- Reference to data copying section in compendium is missing
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No comments in interactive command blocks!?
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requested review from @brunst--tu-dresden.de