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ZIH
hpcsupport
hpc-compendium
Commits
cb7497a3
Commit
cb7497a3
authored
3 years ago
by
Taras Lazariv
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Make linter happy
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bc5139e2
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5 merge requests
!333
Draft: update NGC containers
,
!322
Merge preview into main
,
!319
Merge preview into main
,
!279
Draft: Machine Learning restructuring
,
!258
Data Analytics restructuring
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doc.zih.tu-dresden.de/docs/software/data_analytics_with_r.md
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doc.zih.tu-dresden.de/docs/software/data_analytics_with_r.md
doc.zih.tu-dresden.de/docs/software/python_virtual_environments.md
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doc.zih.tu-dresden.de/docs/software/data_analytics_with_r.md
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cb7497a3
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@@ -84,7 +84,7 @@ Module TensorFlow/2.3.1-fosscuda-2019b-Python-3.7.4 and 15 dependencies loaded.
```
!!! warning
Be aware that for compatibility reasons it is important to choose modules with
Be aware that for compatibility reasons it is important to choose modules with
the same toolchain version (in this case
`fosscuda/2019b`
). For reference see
[
here
](
modules.md
)
In order to interact with Python-based frameworks (like TensorFlow)
`reticulate`
R library is used.
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@@ -201,7 +201,7 @@ tf.Tensor(b'Hello TensorFlow', shape=(), dtype=string)
## Parallel Computing with R
Generally, the R code is serial. However, many computations in R can be made faster by the use of
parallel computations. This section concentrates on most general methods and examples.
parallel computations. This section concentrates on most general methods and examples.
The
[
parallel
](
https://www.rdocumentation.org/packages/parallel/versions/3.6.2
)
library
will be used below.
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@@ -289,7 +289,7 @@ This way of the R parallelism uses the
[
MPI
](
https://en.wikipedia.org/wiki/Message_Passing_Interface
)
(
Message
Passing Interface) as a
"back-end" for its parallel operations. The MPI-based job in R is very similar to submitting an
[
MPI Job
](
../jobs_and_resources/slurm.md#binding-and-distribution-of-tasks
)
since both are running
multicore jobs on multiple nodes. Below is an example of running R script with the Rmpi on
multicore jobs on multiple nodes. Below is an example of running R script with the Rmpi on
ZIH system:
```
Bash
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doc.zih.tu-dresden.de/docs/software/python_virtual_environments.md
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@@ -43,7 +43,7 @@ Successfully installed torchvision-0.10.0
??? comment
clear up the following. Maybe leave only conda stuff...
There are two methods of how to work with virtual environments on
There are two methods of how to work with virtual environments on
ZIH system:
1.
**virtualenv**
is a standard Python tool to create isolated Python environments.
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