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ZIH
hpcsupport
hpc-compendium
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8bff37ce
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8bff37ce
authored
1 year ago
by
Natalie Breidenbach
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Update big_data_frameworks.md
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...
@@ -37,16 +37,16 @@ as via [Jupyter notebooks](#jupyter-notebook). All three ways are outlined in th
...
@@ -37,16 +37,16 @@ as via [Jupyter notebooks](#jupyter-notebook). All three ways are outlined in th
### Default Configuration
### Default Configuration
The Spark and Flink modules are available in
both
`scs5`
and
`ml
`
environment
s
.
The Spark and Flink modules are available in
the
`power
`
environment.
Thus, Spark and Flink can be executed using different CPU architectures, e.g.,
Haswell and
Power
9
.
Thus, Spark and Flink can be executed using different CPU architectures, e.g., Power.
Let us assume that two nodes should be used for the computation. Use a
`srun`
command similar to
Let us assume that two nodes should be used for the computation. Use a
`srun`
command similar to
the following to start an interactive session
using the partition
`haswell`
. The following code
the following to start an interactive session. The following code
snippet shows a job submission
to haswell nodes
with an allocation of two nodes with 60000 MB main
snippet shows a job submission with an allocation of two nodes with 60000 MB main
memory exclusively for one hour:
memory exclusively for one hour:
```
console
```
console
marie@login$
srun
--partition
=
haswell
--nodes
=
2
--mem
=
60000M
--exclusive
--time
=
01:00:00
--pty
bash
-l
marie@login
.power
$
srun
--nodes
=
2
--mem
=
60000M
--exclusive
--time
=
01:00:00
--pty
bash
-l
```
```
Once you have the shell, load desired Big Data framework using the command
Once you have the shell, load desired Big Data framework using the command
...
@@ -117,11 +117,11 @@ can start with a copy of the default configuration ahead of your interactive ses
...
@@ -117,11 +117,11 @@ can start with a copy of the default configuration ahead of your interactive ses
=== "Spark"
=== "Spark"
```
console
```
console
marie@login$
cp
-r
$SPARK_HOME
/conf my-config-template
marie@login
.power
$
cp
-r
$SPARK_HOME
/conf my-config-template
```
```
=== "Flink"
=== "Flink"
```
console
```
console
marie@login$
cp
-r
$FLINK_ROOT_DIR
/conf my-config-template
marie@login
.power
$
cp
-r
$FLINK_ROOT_DIR
/conf my-config-template
```
```
After you have changed
`my-config-template`
, you can use your new template in an interactive job
After you have changed
`my-config-template`
, you can use your new template in an interactive job
...
@@ -175,7 +175,6 @@ example below:
...
@@ -175,7 +175,6 @@ example below:
```
bash
```
bash
#!/bin/bash -l
#!/bin/bash -l
#SBATCH --time=01:00:00
#SBATCH --time=01:00:00
#SBATCH --partition=haswell
#SBATCH --nodes=2
#SBATCH --nodes=2
#SBATCH --exclusive
#SBATCH --exclusive
#SBATCH --mem=60000M
#SBATCH --mem=60000M
...
@@ -205,7 +204,6 @@ example below:
...
@@ -205,7 +204,6 @@ example below:
```
bash
```
bash
#!/bin/bash -l
#!/bin/bash -l
#SBATCH --time=01:00:00
#SBATCH --time=01:00:00
#SBATCH --partition=haswell
#SBATCH --nodes=2
#SBATCH --nodes=2
#SBATCH --exclusive
#SBATCH --exclusive
#SBATCH --mem=60000M
#SBATCH --mem=60000M
...
...
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