- Moved to Seurat v5 official release
- Added R packages scuttle, SoupX, scDblFinder

Added R packages gt and gtsummary.

Added R packages styler and tictoc. Updated rstudio-server.

- Updated R to version 4.3
- Updated all R CRAN, Bioconductor and github packages to their most recent versions
- Switched to Seurat 5 for support of large datasets (using on-disk BPcells) and multimodal analyses (incl signac for scATAC-seq)
- Updated quarto
- Updated RStudio
- Added bedtools and samtools

- reproducibility of PCA is now tested
- cellrank v2 update
- several issues fixed

built gdal library from source to fix compilation problems of depending r packages

added sccode, pydesq2, and pypath-omipath

added scATAC packages Signac and SCENIC+
+some more fixes and tests

- fixed cellrank

update R and python packages

added liana for cell-cell communication