Commits · main · dcgc-bfx / Manage Genomes

Mar 06, 2025
- cleaning · 5dc582c5
  Rajinder Gupta authored 1 week ago
  
  5dc582c5
Mar 05, 2025
- tries different mirrors biomaRt · 3f166162
  Rajinder Gupta authored 1 week ago
  
  3f166162
Feb 28, 2025
- dynamically add mem for rules + retries · 6dbbab2e
  Rajinder Gupta authored 1 week ago
  
  6dbbab2e
Feb 27, 2025
- clean & debug · ab95e4a5
  Rajinder Gupta authored 2 weeks ago
  
  ab95e4a5
- pdf added · 917ab5b3
  Rajinder Gupta authored 2 weeks ago
  
  917ab5b3
- example configs · 2bc46c96
  Rajinder Gupta authored 2 weeks ago
  
  2bc46c96
Feb 24, 2025
- slurm path updated · 2e1e4c7e
  Rajinder Gupta authored 2 weeks ago
  
  2e1e4c7e
- Typo · 8e0d8502
  Rajinder Gupta authored 2 weeks ago
  
  8e0d8502
- Handle more cases for getting desc · cb08f145
  Rajinder Gupta authored 2 weeks ago
  
  cb08f145
- fasta index file added to rule input · 1b1cf45e
  Rajinder Gupta authored 2 weeks ago
  
  1b1cf45e
- Changed --cores to --jobs · bc06738a
  Andreas Petzold authored 2 weeks ago
  
  bc06738a
Feb 20, 2025
- Merge branch 'main' of gitlab.hrz.tu-chemnitz.de:dcgc-bfx/manage_genomes into main · b6f66c8b
  Rajinder Gupta authored 3 weeks ago
  
  b6f66c8b
- multiple updates · 57355c0d
  Rajinder Gupta authored 3 weeks ago
  
  57355c0d
Feb 12, 2025
- Correct tree functions (directory structure) · 224edd65
  Ulrike Anne Friedrich authored 4 weeks ago
  
  224edd65
Feb 11, 2025
- Updated README.md so that pipeline is run on the cluster · d7267057
  Andreas Petzold authored 1 month ago
  
  d7267057
Feb 07, 2025
- bug fixes and cleaning · 28139d27
  Rajinder Gupta authored 1 month ago
  
  28139d27
- Updated rules · 754287f3
  andpet0101 authored 1 month ago
  
  754287f3
- Updated README.md · ec3dd813
  andpet0101 authored 1 month ago
  
  ec3dd813
- Updated README.md · 13e97330
  andpet0101 authored 1 month ago
  
  13e97330
Feb 05, 2025
- Added resources, cellranger-arc · 7d5cb887
  Rajinder Gupta authored 1 month ago
  
  7d5cb887
Jan 31, 2025
- readme · 658716b0
  Rajinder Gupta authored 1 month ago
  
  658716b0
- update readme · 326400fb
  Rajinder Gupta authored 1 month ago
  
  326400fb
- changes for running on the cluster · 16c23596
  Rajinder Gupta authored 1 month ago
  
  16c23596
- filtered gtf for cellranger created · 09d0cd28
  Rajinder Gupta authored 1 month ago
  
  09d0cd28
Jan 30, 2025
- cleaning and better readability · fb2fc037
  Rajinder Gupta authored 1 month ago
  
  fb2fc037
- species -> genome name created with `-` · ac37150c
  Rajinder Gupta authored 1 month ago
  
  ac37150c
- log file path fixed · 72786996
  Rajinder Gupta authored 1 month ago
  
  72786996
- species names will keep ` _` · e685c877
  Rajinder Gupta authored 1 month ago
  
  e685c877
Jan 27, 2025
- uniform species naming for all sources · c878771a
  Rajinder Gupta authored 1 month ago
  
  c878771a
- Update README.md · d83ceba9
  Rajinder Gupta authored 1 month ago
  
  d83ceba9
- Update README.md · 0f3783f5
  Rajinder Gupta authored 1 month ago
  
  0f3783f5
Jan 16, 2025
- chr info added to gt file · d4db8337
  Rajinder Gupta authored 1 month ago
  
  d4db8337
- debugging: cal transcript length · f89835d3
  Rajinder Gupta authored 1 month ago
  
  f89835d3
Jan 15, 2025
- debugging: cal gene length · 46501a2d
  Rajinder Gupta authored 1 month ago
  
  46501a2d
- cleaning · 83914438
  Rajinder Gupta authored 1 month ago
  
  83914438
Jan 14, 2025
- ignore files · fcc52a21
  Rajinder Gupta authored 1 month ago
  
  fcc52a21
- debugging · 203ad48b
  Rajinder Gupta authored 1 month ago
  
  203ad48b
- Get gene name as well · bfe4c9c3
  Rajinder Gupta authored 1 month ago
  
  bfe4c9c3
Jan 10, 2025
- typo · 2818e451
  Rajinder Gupta authored 2 months ago
  
  2818e451
Nov 12, 2024
- python lib install · 1dc63c9c
  Rajinder Gupta authored 3 months ago
  
  1dc63c9c