diff --git a/doc.zih.tu-dresden.de/docs/archive/install_jupyter.md b/doc.zih.tu-dresden.de/docs/archive/install_jupyter.md index 02b78701bd8fa5b5eb3fbb7ed2de2cae9639042e..a1d2966509244d71d32c7bfa22d74c18b45be628 100644 --- a/doc.zih.tu-dresden.de/docs/archive/install_jupyter.md +++ b/doc.zih.tu-dresden.de/docs/archive/install_jupyter.md @@ -148,7 +148,7 @@ c.NotebookApp.allow_remote_access = True #SBATCH --time=02:30:00 #SBATCH --mem=4000M #SBATCH -J "jupyter-notebook" # job-name -#SBATCH -A p_marie +#SBATCH -A p_number_crunch unset XDG_RUNTIME_DIR # might be required when interactive instead of sbatch to avoid 'Permission denied error' srun jupyter notebook diff --git a/doc.zih.tu-dresden.de/docs/contrib/content_rules.md b/doc.zih.tu-dresden.de/docs/contrib/content_rules.md index f054c5fa3594c219807e9eed301db0d43d610128..358cd153282e3bdf4240f144bbafa618151f383d 100644 --- a/doc.zih.tu-dresden.de/docs/contrib/content_rules.md +++ b/doc.zih.tu-dresden.de/docs/contrib/content_rules.md @@ -134,7 +134,7 @@ We follow this rules regarding prompts: an example invocation, perhaps with output, should be given with the normal `console` code block. See also [Code Block description below](#code-blocks-and-syntax-highlighting). * Using some magic, the prompt as well as the output is identified and will not be copied! -* Stick to the [generic user name](#data-privacy-and-generic-user-name) `marie`. +* Stick to the [generic user name](#data-privacy-and-generic-names) `marie`. ### Code Blocks and Syntax Highlighting @@ -245,16 +245,17 @@ _Result_:  -### Data Privacy and Generic User Name +### Data Privacy and Generic Names -Where possible, replace login, project name and other private data with clearly arbitrary placeholders. -E.g., use the generic login `marie` and the corresponding project name `p_marie`. +Where possible, replace login, project name and other private data with clearly arbitrary +placeholders. In particular, use the generic login `marie` and the project title `p_number_crunch` +as placeholders. ```console marie@login$ ls -l -drwxr-xr-x 3 marie p_marie 4096 Jan 24 2020 code -drwxr-xr-x 3 marie p_marie 4096 Feb 12 2020 data --rw-rw---- 1 marie p_marie 4096 Jan 24 2020 readme.md +drwxr-xr-x 3 marie p_number_crunch 4096 Jan 24 2020 code +drwxr-xr-x 3 marie p_number_crunch 4096 Feb 12 2020 data +-rw-rw---- 1 marie p_number_crunch 4096 Jan 24 2020 readme.md ``` ## Mark Omissions diff --git a/doc.zih.tu-dresden.de/docs/data_transfer/datamover.md b/doc.zih.tu-dresden.de/docs/data_transfer/datamover.md index 0bd3fbe88e6a7957232a04a98c2c5eeb33a245ad..a63971bb0ca93c46c8faa41897d26f10c6c2162a 100644 --- a/doc.zih.tu-dresden.de/docs/data_transfer/datamover.md +++ b/doc.zih.tu-dresden.de/docs/data_transfer/datamover.md @@ -45,7 +45,7 @@ To identify the mount points of the different filesystems on the data transfer m !!! example "Copying data from `/beegfs/global0` to `/projects` filesystem." ``` console - marie@login$ dtcp -r /beegfs/global0/ws/marie-workdata/results /projects/p_marie/. + marie@login$ dtcp -r /beegfs/global0/ws/marie-workdata/results /projects/p_number_crunch/. ``` !!! example "Moving data from `/beegfs/global0` to `/warm_archive` filesystem." @@ -57,7 +57,7 @@ To identify the mount points of the different filesystems on the data transfer m !!! example "Archive data from `/beegfs/global0` to `/archiv` filesystem." ``` console - marie@login$ dttar -czf /archiv/p_marie/results.tgz /beegfs/global0/ws/marie-workdata/results + marie@login$ dttar -czf /archiv/p_number_crunch/results.tgz /beegfs/global0/ws/marie-workdata/results ``` !!! warning diff --git a/doc.zih.tu-dresden.de/docs/jobs_and_resources/slurm_examples.md b/doc.zih.tu-dresden.de/docs/jobs_and_resources/slurm_examples.md index b6ec206cf1950f416e81318daab0c9e0e88ba45a..ebfd52972ac785b851a0c02758904a68dd09af8f 100644 --- a/doc.zih.tu-dresden.de/docs/jobs_and_resources/slurm_examples.md +++ b/doc.zih.tu-dresden.de/docs/jobs_and_resources/slurm_examples.md @@ -109,7 +109,7 @@ for `sbatch/srun` in this case is `--gres=gpu:[NUM_PER_NODE]` (where `NUM_PER_NO #SBATCH --cpus-per-task=6 # use 6 threads per task #SBATCH --gres=gpu:1 # use 1 GPU per node (i.e. use one GPU per task) #SBATCH --time=01:00:00 # run for 1 hour - #SBATCH --account=p_marie # account CPU time to project p_marie + #SBATCH --account=p_number_crunch # account CPU time to project p_number_crunch srun ./your/cuda/application # start you application (probably requires MPI to use both nodes) ``` diff --git a/doc.zih.tu-dresden.de/docs/software/building_software.md b/doc.zih.tu-dresden.de/docs/software/building_software.md index c83932a16c1c0227cb160d4853cd1815626fc404..73952b06efde809b7e91e936be0fbf9b240f88a8 100644 --- a/doc.zih.tu-dresden.de/docs/software/building_software.md +++ b/doc.zih.tu-dresden.de/docs/software/building_software.md @@ -17,16 +17,16 @@ For instance, when using CMake and keeping your source in `/projects`, you could ```console # save path to your source directory: -marie@login$ export SRCDIR=/projects/p_marie/mysource +marie@login$ export SRCDIR=/projects/p_number_crunch/mysource # create a build directory in /scratch: -marie@login$ mkdir /scratch/p_marie/mysoftware_build +marie@login$ mkdir /scratch/p_number_crunch/mysoftware_build # change to build directory within /scratch: -marie@login$ cd /scratch/p_marie/mysoftware_build +marie@login$ cd /scratch/p_number_crunch/mysoftware_build # create Makefiles: -marie@login$ cmake -DCMAKE_INSTALL_PREFIX=/projects/p_marie/mysoftware $SRCDIR +marie@login$ cmake -DCMAKE_INSTALL_PREFIX=/projects/p_number_crunch/mysoftware $SRCDIR # build in a job: marie@login$ srun --mem-per-cpu=1500 --cpus-per-task=12 --pty make -j 12 diff --git a/doc.zih.tu-dresden.de/docs/software/data_analytics_with_python.md b/doc.zih.tu-dresden.de/docs/software/data_analytics_with_python.md index a7d2781669fc909e0628c6518825542cf8f7ced8..cf8c1b559f4f496a729388a1e1f4353cdcd14733 100644 --- a/doc.zih.tu-dresden.de/docs/software/data_analytics_with_python.md +++ b/doc.zih.tu-dresden.de/docs/software/data_analytics_with_python.md @@ -219,7 +219,7 @@ from dask_jobqueue import SLURMCluster cluster = SLURMCluster(queue='alpha', cores=8, processes=2, - project='p_marie', + project='p_number_crunch', memory="8GB", walltime="00:30:00") @@ -242,7 +242,7 @@ from dask import delayed cluster = SLURMCluster(queue='alpha', cores=8, processes=2, - project='p_marie', + project='p_number_crunch', memory="80GB", walltime="00:30:00", extra=['--resources gpu=1']) @@ -294,7 +294,7 @@ for the Monte-Carlo estimation of Pi. #create a Slurm cluster, please specify your project - cluster = SLURMCluster(queue='alpha', cores=2, project='p_marie', memory="8GB", walltime="00:30:00", extra=['--resources gpu=1'], scheduler_options={"dashboard_address": f":{portdash}"}) + cluster = SLURMCluster(queue='alpha', cores=2, project='p_number_crunch', memory="8GB", walltime="00:30:00", extra=['--resources gpu=1'], scheduler_options={"dashboard_address": f":{portdash}"}) #submit the job to the scheduler with the number of nodes (here 2) requested: diff --git a/doc.zih.tu-dresden.de/docs/software/fem_software.md b/doc.zih.tu-dresden.de/docs/software/fem_software.md index 3f9bf79d54d36711560054101536c82dfbbfe000..8b8eb4cfe10c4476e48c4b30ac7f16b83589a38d 100644 --- a/doc.zih.tu-dresden.de/docs/software/fem_software.md +++ b/doc.zih.tu-dresden.de/docs/software/fem_software.md @@ -59,7 +59,7 @@ Slurm or [writing job files](../jobs_and_resources/slurm.md#job-files). #SBATCH --job-name=yyyy # give a name, what ever you want #SBATCH --mail-type=END,FAIL # send email when the job finished or failed #SBATCH --mail-user=<name>@mailbox.tu-dresden.de # set your email - #SBATCH --account=p_marie # charge compute time to project p_marie + #SBATCH --account=p_number_crunch # charge compute time to project p_number_crunch # Abaqus has its own MPI diff --git a/doc.zih.tu-dresden.de/docs/software/papi.md b/doc.zih.tu-dresden.de/docs/software/papi.md index 7460e3deef48bdf991e1b6fda36332cf0fc149b0..d8108bba3048da33661e0dd320a2807a0dd001aa 100644 --- a/doc.zih.tu-dresden.de/docs/software/papi.md +++ b/doc.zih.tu-dresden.de/docs/software/papi.md @@ -105,11 +105,11 @@ multiple events, please check which events can be measured concurrently using th The PAPI tools must be run on the compute node, using an interactive shell or job. !!! example "Example: Determine the events on the partition `romeo` from a login node" - Let us assume, that you are in project `p_marie`. Then, use the following commands: + Let us assume, that you are in project `p_number_crunch`. Then, use the following commands: ```console marie@login$ module load PAPI - marie@login$ salloc --account=p_marie --partition=romeo + marie@login$ salloc --account=p_number_crunch --partition=romeo [...] marie@compute$ srun papi_avail marie@compute$ srun papi_native_avail @@ -121,12 +121,12 @@ Instrument your application with either the high-level or low-level API. Load th compile your application against the PAPI library. !!! example - Assuming that you are in project `p_marie`, use the following commands: + Assuming that you are in project `p_number_crunch`, use the following commands: ```console marie@login$ module load PAPI marie@login$ gcc app.c -o app -lpapi - marie@login$ salloc --account=p_marie --partition=romeo + marie@login$ salloc --account=p_number_crunch --partition=romeo marie@compute$ srun ./app [...] # Exit with Ctrl+D diff --git a/doc.zih.tu-dresden.de/docs/software/private_modules.md b/doc.zih.tu-dresden.de/docs/software/private_modules.md index 6dd2d3d0498d78ca188c9af1af272fa3e6e6537d..00982700ec5bc35fe757660897cc1631453a820f 100644 --- a/doc.zih.tu-dresden.de/docs/software/private_modules.md +++ b/doc.zih.tu-dresden.de/docs/software/private_modules.md @@ -27,12 +27,12 @@ marie@compute$ cd privatemodules/<sw_name> ``` Project private module files for software that can be used by all members of your group should be -located in your global projects directory, e.g., `/projects/p_marie/privatemodules`. Thus, create +located in your global projects directory, e.g., `/projects/p_number_crunch/privatemodules`. Thus, create this directory: ```console -marie@compute$ mkdir --verbose --parents /projects/p_marie/privatemodules/<sw_name> -marie@compute$ cd /projects/p_marie/privatemodules/<sw_name> +marie@compute$ mkdir --verbose --parents /projects/p_number_crunch/privatemodules/<sw_name> +marie@compute$ cd /projects/p_number_crunch/privatemodules/<sw_name> ``` !!! note @@ -110,7 +110,7 @@ marie@login$ module use $HOME/privatemodules for your private module files and ```console -marie@login$ module use /projects/p_marie/privatemodules +marie@login$ module use /projects/p_number_crunch/privatemodules ``` for group private module files, respectively. diff --git a/doc.zih.tu-dresden.de/util/grep-forbidden-patterns.sh b/doc.zih.tu-dresden.de/util/grep-forbidden-patterns.sh index b2f8b3478d7d8aaa2247b392c97dc09d09348743..cacde0d9ee84f903a55d3109dcd330d3e43184ad 100755 --- a/doc.zih.tu-dresden.de/util/grep-forbidden-patterns.sh +++ b/doc.zih.tu-dresden.de/util/grep-forbidden-patterns.sh @@ -46,9 +46,9 @@ i ^[ |]*|$ Avoid spaces at end of lines. doc.zih.tu-dresden.de/docs/accessibility.md i [[:space:]]$ -When referencing projects, please use p_marie for consistency. +When referencing projects, please use p_number_crunch for consistency. -i \<p_ p_marie +i \<p_ p_number_crunch Avoid \`home\`. Use home without backticks instead. i \`home\`