diff --git a/doc.zih.tu-dresden.de/docs/software/JupyterHub.md b/doc.zih.tu-dresden.de/docs/software/JupyterHub.md index cccbdc07ae86110691c15683d2db8e79f37188ff..76f5ee2160a0f96453964cd1214951f71e9747ac 100644 --- a/doc.zih.tu-dresden.de/docs/software/JupyterHub.md +++ b/doc.zih.tu-dresden.de/docs/software/JupyterHub.md @@ -6,9 +6,7 @@ work with jupyter notebooks on Taurus. Subpages: - [JupyterHub for Teaching (git-pull feature, quickstart links, direct - links to notebook files)](Compendium.JupyterHubForTeaching) - - + links to notebook files)](JupyterHubForTeaching.md) ## Disclaimer @@ -21,7 +19,7 @@ support in every case. ## Access **%RED%NOTE:%ENDCOLOR%** This service is only available for users with -an active HPC project. See [here](Access) how to apply for an HPC +an active HPC project. See [here](../access.md) how to apply for an HPC project. JupyterHub is available here:\<br /> @@ -43,10 +41,10 @@ For advanced users we have an extended form where you can change many settings. You can: - modify Slurm parameters to your needs ( [more about - Slurm](Compendium.Slurm)) + Slurm](../jobs/Slurm.md)) - assign your session to a project or reservation - load modules from the [LMOD module - system](Compendium.RuntimeEnvironment) + system](../data_management/RuntimeEnvironment.md) - choose a different standard environment (in preparation for future software updates or testing additional features) @@ -162,8 +160,8 @@ This message often appears instantly if your Slurm parameters are not valid. Please check those settings against the available hardware. Useful pages for valid Slurm parameters: -- [Slurm batch system (Taurus)](SystemTaurus#Batch_System) -- [General information how to use Slurm](Slurm) +- [Slurm batch system (Taurus)] **TODO LINK** (../jobs/SystemTaurus#Batch_System) +- [General information how to use Slurm](../jobs/Slurm.md) ### Error message in JupyterLab @@ -194,7 +192,7 @@ exact standard environment through the spawner form: \<img alt="environment_package_list.png" src="%ATTACHURL%/environment_package_list.png" style="border: 1px solid -#888;" title="JupyterHub environment package list" /> +\#888;" title="JupyterHub environment package list" /> This list shows all packages of the currently selected conda environment. This depends on your settings for partition (cpu @@ -226,7 +224,7 @@ Here's a short list of some included software: \* generic = all partitions except ml -\*\* R is loaded from the [module system](Compendium.RuntimeEnvironment) +\*\* R is loaded from the [module system](../data_management/RuntimeEnvironment.md) ### Creating and using your own environment @@ -293,13 +291,13 @@ venv is the preferred way to create a Python virtual environment. #### Conda environment Load the needed module for Intel nodes - +''' $ module load Anaconda3 - +''' ... or for IBM nodes (ml partition): - +''' $ module load PythonAnaconda - +''' Continue with environment creation, package installation and kernel registration: