diff --git a/doc.zih.tu-dresden.de/docs/software/virtual_desktops.md b/doc.zih.tu-dresden.de/docs/software/virtual_desktops.md
index 123c323b2d3acc9c24863ca203179f8338da4dce..cb809c3a99022c8ec5c5d3e9a98b96b8533baa0b 100644
--- a/doc.zih.tu-dresden.de/docs/software/virtual_desktops.md
+++ b/doc.zih.tu-dresden.de/docs/software/virtual_desktops.md
@@ -1,89 +1,3 @@
-# Virtual desktops
+# Virtual Desktops
-Use WebVNC or NICE DCV to run GUI applications on HPC resources.
-
-<span class="twiki-macro TABLE" columnwidths="10%,45%,45%"></span>
-
-| | | |
-|----------------|-------------------------------------------------------|-------------------------------------------------|
-| | **WebVNC** | **NICE DCV** |
-| **use case** | all GUI applications that do \<u>not need\</u> OpenGL | only GUI applications that \<u>need\</u> OpenGL |
-| **partitions** | all\* (except partitions with GPUs (gpu2, hpdlf, ml) | dcv |
-
-## Launch a virtual desktop
-
-<span class="twiki-macro TABLE" columnwidths="10%,45%,45%"></span> \|
-**step 1** \| Navigate to \<a href="<https://taurus.hrsk.tu-dresden.de>"
-target="\_blank"><https://taurus.hrsk.tu-dresden.de>\</a>. There is our
-[JupyterHub](../access/jupyterhub.md) instance. \|\| \| **step 2** \|
-Click on the "advanced" tab and choose a preset: \|\|
-
-| | | |
-|-------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|-------------------------------------------------------------|
-| ^ | **WebVNC** | **DCV** |
-| **step 3** | Optional: Finetune your session with the available SLURM job parameters or assign a certain project or reservation. Then save your settings in a new preset for future use. | |
-| **step 4** | Click on "Spawn". JupyterHub starts now a SLURM job for you. If everything is ready the JupyterLab interface will appear to you. | |
-| **step 5"** | Click on the **button "WebVNC"** to start a virtual desktop. | Click on the \*button "NICE DCV"to start a virtual desktop. |
-| ^ | The virtual desktop starts in a new tab or window. | |
-
-### Demonstration
-
-\<video controls="" width="320" style="border: 1px solid black">\<source
-src="<https://doc.zih.tu-dresden.de/hpc-wiki/pub/Compendium/VirtualDesktops/start-virtual-desktop-dcv.mp4>"
-type="video/mp4">\<source
-src="<https://doc.zih.tu-dresden.de/hpc-wiki/pub/Compendium/VirtualDesktops/start-virtual-desktop-dcv.webm>"
-type="video/webm">\</video>
-
-### Using the quickstart feature
-
-JupyterHub can start a job automatically if the URL contains certain
-parameters.
-
-<span class="twiki-macro TABLE" columnwidths="10%,45%,45%"></span>
-
-| | | |
-|----------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| examples | \<a href="<https://taurus.hrsk.tu-dresden.de/jupyter/hub/spawn#/>\~(partition\~'interactive\~cpuspertask\~'2\~mempercpu\~'2583)" target="\_blank" style="font-size: 1.5em">WebVNC\</a> | \<a href="<https://taurus.hrsk.tu-dresden.de/jupyter/hub/spawn#/>\~(partition\~'dcv\~cpuspertask\~'6\~gres\~'gpu\*3a1\~mempercpu\~'2583)" target="\_blank" style="font-size: 1.5em">NICE DCV\</a> |
-| details about the examples | `interactive` partition, 2 CPUs with 2583 MB RAM per core, no GPU | `dcv` partition, 6 CPUs with 2583 MB RAM per core, 1 GPU |
-| link creator | Use the spawn form to set your preferred options. The browser URL will be updated with the corresponding parameters. | |
-
-If you close the browser tabs or windows or log out from your local
-machine, you are able to open the virtual desktop later again - as long
-as the session runs. But please remember that a SLURM job is running in
-the background which has a certain timelimit.
-
-## Reconnecting to a session
-
-In order to reconnect to an active instance of WebVNC, simply repeat the
-steps required to start a session, beginning - if required - with the
-login, then clicking "My server", then by pressing the "+" sign on the
-upper left corner. Provided your server is still running and you simply
-closed the window or logged out without stopping your server, you will
-find your WebVNC desktop the way you left it.
-
-## Terminate a remote session
-
-<span class="twiki-macro TABLE" columnwidths="10%,90%"></span> \| **step
-1** \| Close the VNC viewer tab or window. \| \| **step 2** \| Click on
-File \> Log Out in the JupyterLab main menu. Now you get redirected to
-the JupyterLab control panel. If you don't have your JupyterLab tab or
-window anymore, navigate directly to \<a
-href="<https://taurus.hrsk.tu-dresden.de/jupyter/hub/home>"
-target="\_blank"><https://taurus.hrsk.tu-dresden.de/jupyter/hub/home>\</a>.
-\| \| **step 3** \| Click on "Stop My Server". This cancels the SLURM
-job and terminates your session. \|
-
-### Demonstration
-
-\<video controls="" width="320" style="border: 1px solid black">\<source
-src="<https://doc.zih.tu-dresden.de/hpc-wiki/pub/Compendium/VirtualDesktops/terminate-virtual-desktop-dcv.mp4>"
-type="video/mp4">\<source
-src="<https://doc.zih.tu-dresden.de/hpc-wiki/pub/Compendium/VirtualDesktops/terminate-virtual-desktop-dcv.webm>"
-type="video/webm">\</video>
-
-**Remark:** This does not work if you click on the "Logout"-Btn in your
-virtual desktop. Instead this will just close your DCV session or cause
-a black screen in your WebVNC window without a possibility to recover a
-virtual desktop in the same Jupyter session. The solution for now would
-be to terminate the whole jupyter session and start a new one like
-mentioned above.
+coming soon
diff --git a/doc.zih.tu-dresden.de/hackathon.md b/doc.zih.tu-dresden.de/hackathon.md
deleted file mode 100644
index d41781c45455139c62708c708cf42e05babc3b65..0000000000000000000000000000000000000000
--- a/doc.zih.tu-dresden.de/hackathon.md
+++ /dev/null
@@ -1,75 +0,0 @@
-# Hackathon June 2021
-
-The goals for the hackathon are:
-
-* Familiarize main editors (ZIH admin group and domain experts) with new workflow and system
-* Bringing new compendium to life by
- 1. Transferring content from old compendium into new structure and system
- 1. Fixing checks
- 1. Reviewing and updating transferred content
-
-## twiki2md
-
-The script `twiki2md` converts twiki source files into markdown source files using pandoc. It
-outputs the markdown source files according to the old pages tree into subdirectories. The
-output and **starting point for transferring** old content into the new system can be found
-at branch `preview` within directory `twiki2md/root/`.
-
-## Steps
-
-### Familiarize with New Wiki System
-
-* Make sure your are member of the [repository](https://gitlab.hrz.tu-chemnitz.de/zih/hpcsupport/hpc-compendium).
- If not, ask Danny Rotscher for adding you.
-* Clone repository and checkout branch `preview`
-
-```Shell Session
-~ git clone git@gitlab.hrz.tu-chemnitz.de:zih/hpcsupport/hpc-compendium.git
-~ cd hpc-compendium
-~ git checkout preview
-```
-
-* Open terminal and build documentation using `mkdocs`
- * [using mkdocs](README.md#preview-using-mkdocs)
- * [installing dependencies](README.md#install-dependencies)
-
-### Transferring Content
-
-1. Grab a markdown source file from `twiki2md/root/` directory (a topic you are comfortable with)
-1. Find place in new structure according to
-[Typical Project Schedule](https://doc.zih.tu-dresden.de/hpc-wiki/bin/view/Compendium/TypicalProjectSchedule)
-
- * Create new feature branch holding your work `~ git checkout -b <BRANCHNAME>`, whereas branch
- name can be `<FILENAME>` for simplicity
- * Copy reviewed markdown source file to `docs/` directory via
- `~ git mv twiki2md/root/<FILENAME>.md doc.zih.tu-dresden.de/docs/<SUBDIR>/<FILENAME>.md`
- * Update navigation section in `mkdocs.yaml`
-
-1. Commit and push to feature branch via
-
-```Shell Session
-~ git commit docs/<SUBDIR>/<FILENAME>.md mkdocs.yaml -m "MESSAGE"
-~ git push origin <BRANCHNAME>
-```
-
-1. Run checks locally and fix the issues. Otherwise the pipeline will fail.
- * [Check links](README.md#check-links) (There might be broken links which can only be solved
- with ongoing transfer of content.)
- * [Check pages structure](README.md#check-pages-structure)
- * [Markdown Linter](README.md#markdown-linter)
-1. Create
- [merge request](https://gitlab.hrz.tu-chemnitz.de/zih/hpcsupport/hpc-compendium/-/merge_requests)
- against `preview` branch
-
-### Review Content
-
-The following steps are optional in a sense, that the first goal of the hackathon is to transfer all
-old pages into new structure. If this is done, the content of the files need to be reviewed:
-
- * Remove outdated information
- * Update content
- * Apply [writing style](README.md#writing-style)
- * Replace or remove (leftover) html constructs in markdown source file
- * Add ticks for code blocks and command if necessary
- * Fix internal links (mark as todo if necessary)
- * Review and update, remove outdated content
diff --git a/twiki2md/root/Applications/Electrodynamics.md b/twiki2md/root/Applications/Electrodynamics.md
deleted file mode 100644
index c7b99613df2abfbad8b708d27cae01925a382925..0000000000000000000000000000000000000000
--- a/twiki2md/root/Applications/Electrodynamics.md
+++ /dev/null
@@ -1,17 +0,0 @@
-# Electromagnetic Field Simulation
-
-The following applications are installed at ZIH:
-
-| | | |
-|----------|----------|------------|
-| | **Mars** | **Deimos** |
-| **HFSS** | | 11.0.2 |
-
-## HFSS
-
-[HFSS](http://www.ansoft.com/products/hf/hfss/) is the industry-standard
-simulation tool for 3D full-wave electromagnetic field simulation. HFSS
-provides E- and H-fields, currents, S-parameters and near and far
-radiated field results.
-
--- Main.mark - 2010-01-06
diff --git a/twiki2md/root/Applications/SoftwareModulesList.md b/twiki2md/root/Applications/SoftwareModulesList.md
deleted file mode 100644
index 70feb25fc836e0cee838889ef15cc9ca284d9cfa..0000000000000000000000000000000000000000
--- a/twiki2md/root/Applications/SoftwareModulesList.md
+++ /dev/null
@@ -1,962 +0,0 @@
-### SCS5 Environment
-
-<span class="twiki-macro TABLE">headerrows= 1"</span> <span
-class="twiki-macro EDITTABLE"
-format="| text, 30, Software | text, 40, Kategorie | text, 30, Letzte Änderung | text, 30, SGI-UV | text, 30, Taurus | "
-changerows="on"></span>
-
-| Software | Category | Last change | Venus | Taurus |
-|:--------------------------|:----------|:------------|:------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| ABAQUS | cae | 2020-04-30 | \- | 2019 |
-| ABINIT | chem | 2019-07-12 | \- | 8.6.3\<br />8.10.3 |
-| ACE | lib | 2018-11-22 | \- | 6.5.1 |
-| ACTC | lib | 2018-11-22 | \- | 1.1 |
-| AFNI | bio | 2018-11-22 | \- | 20180521 |
-| AMDLibM | perf | 2019-08-20 | \- | 3.4.0 |
-| AMDuProf | perf | 2020-11-26 | \- | 3.3.462\<br />3.1.35 |
-| ANSA | cae | 2021-04-08 | \- | 20.1.4 |
-| ANSYS | tools | 2020-10-23 | \- | 2020R2\<br />19.5\<br />19.2 |
-| ANTLR | tools | 2020-09-29 | \- | 2.7.7 |
-| ANTs | data | 2020-10-06 | \- | 2.3.4 |
-| APR | tools | 2019-11-08 | \- | 1.7.0\<br />1.6.3 |
-| APR-util | tools | 2019-11-08 | \- | 1.6.1 |
-| ASE | chem | 2020-09-29 | \- | 3.19.0\<br />3.18.1\<br />3.16.2 |
-| ATK | vis | 2020-09-02 | \- | 2.34.1\<br />2.28.1 |
-| Advisor | perf | 2018-11-22 | \- | 2018 |
-| Anaconda3 | lang | 2019-10-17 | \- | 2019.03 |
-| AnsysEM | phys | 2018-11-22 | \- | 19.0 |
-| Arrow | data | 2020-12-01 | \- | 0.16.0\<br />0.14.1 |
-| AtomPAW | chem | 2019-09-11 | \- | 4.1.0.6 |
-| Autoconf | devel | 2021-02-17 | \- | 2.69 |
-| Automake | devel | 2021-02-17 | \- | 1.16.2\<br />1.16.1\<br />1.15.1\<br />1.15 |
-| Autotools | devel | 2021-02-17 | \- | 20200321\<br />20180311\<br />20170619\<br />20150215 |
-| Bazel | devel | 2021-03-19 | \- | 3.7.2\<br />3.7.1\<br />3.4.1\<br />0.29.1\<br />0.26.1\<br />0.20.0\<br />0.16.0\<br />0.12.0 |
-| BigDataFrameworkConfigure | devel | 2019-09-16 | \- | 0.0.2\<br />0.0.1 |
-| Bison | lang | 2020-12-11 | \- | 3.7.1\<br />3.5.3\<br />3.3.2\<br />3.0.5\<br />3.0.4\<br />2.7 |
-| Blitz++ | lib | 2019-04-09 | \- | 0.10 |
-| Boost | devel | 2021-04-09 | \- | 1.74.0\<br />1.72.0\<br />1.71.0\<br />1.70.0\<br />1.69.0\<br />1.68.0\<br />1.67.0\<br />1.66.0\<br />1.61.0\<br />1.55.0 |
-| Boost.Python | lib | 2019-02-26 | \- | 1.66.0 |
-| CDO | data | 2020-10-06 | \- | 1.9.8\<br />1.9.4 |
-| CFITSIO | lib | 2019-06-03 | \- | 3.45 |
-| CGAL | numlib | 2020-08-20 | \- | 4.14.3\<br />4.14.1\<br />4.11.1 |
-| CGNS | cae | 2020-10-09 | \- | 3.3.1 |
-| CMake | devel | 2021-02-17 | \- | 3.9.5\<br />3.9.1\<br />3.8.0\<br />3.18.4\<br />3.16.4\<br />3.15.3\<br />3.14.5\<br />3.13.3\<br />3.12.1\<br />3.11.4\<br />3.10.2\<br />3.10.1\<br />3.10.0 |
-| COMSOL | phys | 2021-02-10 | \- | 5.6\<br />5.5\<br />5.4 |
-| CP2K | chem | 2019-12-12 | \- | 6.1\<br />5.1 |
-| CUDA | system | 2021-02-17 | \- | 9.2.88\<br />9.1.85\<br />11.1.1\<br />11.0.2\<br />10.1.243\<br />10.0.130 |
-| CUDAcore | system | 2021-02-17 | \- | 11.1.1\<br />11.0.2 |
-| Check | lib | 2021-02-17 | \- | 0.15.2 |
-| Clang | compiler | 2020-12-09 | \- | 9.0.1\<br />5.0.0 |
-| ClustalW2 | bio | 2018-11-22 | \- | 2.1 |
-| CubeGUI | perf | 2021-01-29 | \- | 4.4.4\<br />4.4 |
-| CubeLib | perf | 2020-10-12 | \- | 4.4.4\<br />4.4 |
-| CubeW | perf | 2018-11-22 | \- | 4.4 |
-| CubeWriter | perf | 2020-10-12 | \- | 4.4.3 |
-| Cython | lang | 2018-11-22 | \- | 0.28.5\<br />0.28.2 |
-| DAMASK | phys | 2020-12-10 | \- | 3.0.0\<br />2.0.3-2992\<br />2.0.3 |
-| DASH | lib | 2018-11-22 | \- | dash |
-| DB | tools | 2021-02-17 | \- | 18.1.40 |
-| DBus | devel | 2020-08-11 | \- | 1.13.8\<br />1.13.6\<br />1.13.12 |
-| DFTB+ | phys | 2021-04-12 | \- | 19.1\<br />18.2\<br />18.1 |
-| DMTCP | tools | 2018-12-06 | \- | 2.5.2\<br />2.5.1 |
-| DOLFIN | math | 2020-12-21 | \- | 2019.1.0\<br />2018.1.0.post1\<br />2017.2.0 |
-| Delft3D | geo | 2020-01-29 | \- | 6.03 |
-| Devel-NYTProf | perf | 2019-08-30 | \- | 6.06 |
-| Doxygen | devel | 2021-03-03 | \- | 1.8.20\<br />1.8.17\<br />1.8.16\<br />1.8.15\<br />1.8.14\<br />1.8.13 |
-| Dyninst | tools | 2019-01-21 | \- | 9.3.2 |
-| ELPA | math | 2021-01-05 | \- | 2019.11.001\<br />2018.11.001\<br />2016.11.001.pre |
-| ELSI | math | 2020-02-27 | \- | 2.5.0 |
-| EMBOSS | bio | 2019-02-11 | \- | 6.6.0 |
-| ESPResSo | phys | 2019-11-19 | \- | 4.1.1 |
-| ETSF_IO | lib | 2020-10-15 | \- | 1.0.4 |
-| EasyBuild | tools | 2021-03-08 | \- | 4.3.3\<br />4.3.2\<br />4.3.1\<br />4.3.0\<br />4.2.2\<br />4.2.0\<br />4.1.2\<br />4.1.1\<br />4.1.0\<br />4.0.1\<br />3.9.4\<br />3.9.3\<br />3.9.2\<br />3.9.1\<br />3.8.1\<br />3.8.0\<br />3.7.1\<br />3.7.0\<br />3.6.2\<br />3.6.1 |
-| Eigen | math | 2021-02-17 | \- | 3.3.8\<br />3.3.7\<br />3.3.4 |
-| Emacs | tools | 2020-02-20 | \- | 25.3 |
-| ErlangOTP | lang | 2019-03-13 | \- | 21.3-no |
-| FFC | math | 2019-02-26 | \- | 2018.1.0 |
-| FFTW | numlib | 2021-02-17 | \- | 3.3.8\<br />3.3.7\<br />3.3.4 |
-| FFmpeg | vis | 2020-08-11 | \- | 4.2.2\<br />4.2.1\<br />4.1.3\<br />4.1\<br />3.4.2 |
-| FIAT | math | 2019-02-26 | \- | 2018.1.0 |
-| FLANN | lib | 2019-08-13 | \- | 1.8.4 |
-| FLTK | vis | 2019-11-08 | \- | 1.3.5\<br />1.3.4 |
-| FSL | bio | 2020-10-30 | \- | 6.0.2\<br />5.0.11 |
-| Flink | devel | 2019-09-16 | \- | 1.9.0\<br />1.8.1 |
-| FoX | lib | 2018-11-22 | \- | 4.1.2 |
-| FreeSurfer | bio | 2020-07-22 | \- | 7.1.1\<br />6.0.0\<br />5.3.0\<br />5.1.0 |
-| FriBidi | vis | 2020-08-11 | \- | 1.0.9\<br />1.0.5\<br />1.0.1 |
-| GAMS | math | 2018-11-28 | \- | 25.1.3 |
-| GCC | compiler | 2020-12-11 | \- | 9.3.0\<br />9.1.0-2.32\<br />8.3.0\<br />8.2.0-2.31.1\<br />8.2.0-2.30\<br />7.3.0-2.30\<br />6.4.0-2.28\<br />10.2.0 |
-| GCCcore | compiler | 2020-12-11 | \- | 9.3.0\<br />9.1.0\<br />8.3.0\<br />8.2.0\<br />7.3.0\<br />6.4.0\<br />6.3.0\<br />10.2.0 |
-| GCL | compiler | 2018-11-22 | \- | 2.6.12 |
-| GDAL | data | 2020-10-06 | \- | 3.0.2\<br />3.0.0\<br />2.2.3 |
-| GDB | debugger | 2020-08-11 | \- | 9.1\<br />8.1 |
-| GDRCopy | lib | 2021-02-17 | \- | 2.1 |
-| GEOS | math | 2020-10-06 | \- | 3.8.0\<br />3.7.2\<br />3.6.2 |
-| GL2PS | vis | 2019-11-08 | \- | 1.4.0 |
-| GLM | lib | 2018-12-11 | \- | 0.9.9.0 |
-| GLPK | tools | 2020-08-28 | \- | 4.65 |
-| GLib | vis | 2020-08-11 | \- | 2.64.1\<br />2.62.0\<br />2.60.1\<br />2.54.3 |
-| GLibmm | vis | 2020-09-24 | \- | 2.49.7 |
-| GMP | math | 2021-02-17 | \- | 6.2.0\<br />6.1.2 |
-| GObject-Introspection | devel | 2020-09-02 | \- | 1.63.1\<br />1.60.1\<br />1.54.1 |
-| GPAW | chem | 2020-01-15 | \- | 19.8.1 |
-| GPAW-setups | chem | 2020-01-15 | \- | 0.9.20000 |
-| GPI2 | base | 2019-05-29 | \- | next-27-05-19\<br />1.3.0 |
-| GROMACS | bio | 2020-10-12 | \- | 2020\<br />2019.4\<br />2018.2 |
-| GSL | numlib | 2020-08-11 | \- | 2.6\<br />2.5\<br />2.4 |
-| GTK+ | vis | 2020-01-13 | \- | 2.24.32 |
-| Gdk-Pixbuf | vis | 2020-09-02 | \- | 2.38.2\<br />2.36.12\<br />2.36.11 |
-| Ghostscript | tools | 2020-08-28 | \- | 9.52\<br />9.50\<br />9.27\<br />9.23\<br />9.22 |
-| GitPython | lib | 2020-04-16 | \- | 3.1.1\<br />3.0.3 |
-| GlobalArrays | lib | 2020-10-12 | \- | 5.7 |
-| Go | compiler | 2019-06-26 | \- | 1.12 |
-| GraphicsMagick | vis | 2019-11-08 | \- | 1.3.33\<br />1.3.31\<br />1.3.28 |
-| Guile | lang | 2020-08-11 | \- | 1.8.8 |
-| Gurobi | math | 2020-12-01 | \- | 9.1.0\<br />9.0.1\<br />8.0.1 |
-| HDF | data | 2018-11-22 | \- | 4.2.13 |
-| HDF5 | data | 2021-03-17 | \- | 1.10.7\<br />1.10.6\<br />1.10.5\<br />1.10.2\<br />1.10.1 |
-| HDFView | vis | 2019-02-20 | \- | 2.14 |
-| Hadoop | devel | 2019-08-29 | \- | 2.7.7 |
-| HarfBuzz | vis | 2020-09-02 | \- | 2.6.4\<br />2.4.0\<br />2.2.0\<br />1.7.5 |
-| Horovod | tools | 2020-01-24 | \- | 0.18.2 |
-| Hyperopt | lib | 2020-02-19 | \- | 0.2.2\<br />0.1.1 |
-| Hypre | numlib | 2020-12-08 | \- | 2.18.2\<br />2.14.0 |
-| ICU | lib | 2021-03-17 | \- | 67.1\<br />66.1\<br />64.2\<br />61.1\<br />56.1 |
-| IPython | tools | 2019-11-19 | \- | 7.7.0\<br />6.4.0\<br />6.3.1 |
-| ImageMagick | vis | 2020-08-28 | \- | 7.0.9-5\<br />7.0.8-46\<br />7.0.8-11\<br />7.0.7-39\<br />7.0.10-1 |
-| Inspector | tools | 2019-01-22 | \- | 2019\<br />2018 |
-| Ipopt | lib | 2018-11-22 | \- | 3.12.11 |
-| JUnit | devel | 2019-02-13 | \- | 4.12 |
-| JasPer | vis | 2020-08-11 | \- | 2.0.14\<br />1.900.1 |
-| Java | lang | 2020-12-02 | \- | 14.0.2\<br />11.0.2\<br />1.8.0-162\<br />1.8.0-161 |
-| JsonCpp | lib | 2021-03-17 | \- | 1.9.4\<br />1.9.3 |
-| Julia | lang | 2020-07-14 | \- | 1.4.2\<br />1.1.1\<br />1.0.2 |
-| Keras | math | 2020-03-20 | \- | 2.3.1\<br />2.2.4\<br />2.2.0 |
-| LAME | data | 2020-08-11 | \- | 3.100 |
-| LAMMPS | chem | 2020-08-11 | \- | 7Aug19\<br />3Mar2020\<br />20180316\<br />12Dec2018 |
-| LLVM | compiler | 2020-09-25 | \- | 9.0.1\<br />9.0.0\<br />8.0.1\<br />7.0.1\<br />6.0.0\<br />5.0.1 |
-| LMDB | lib | 2021-03-17 | \- | 0.9.24 |
-| LS-DYNA | cae | 2020-12-11 | \- | DEV-81069\<br />12.0.0\<br />11.1.0\<br />11.0.0\<br />10.1.0 |
-| LS-Opt | cae | 2019-08-20 | \- | 6.0.0\<br />5.2.1 |
-| LS-PrePost | cae | 2019-05-03 | \- | 4.6\<br />4.5\<br />4.3 |
-| LibTIFF | lib | 2021-02-17 | \- | 4.1.0\<br />4.0.9\<br />4.0.10 |
-| LibUUID | lib | 2019-11-08 | \- | 1.0.3 |
-| Libint | chem | 2019-10-14 | \- | 1.1.6 |
-| LittleCMS | vis | 2020-08-28 | \- | 2.9 |
-| M4 | devel | 2020-12-11 | \- | 1.4.18\<br />1.4.17 |
-| MATIO | lib | 2018-12-11 | \- | 1.5.12 |
-| MATLAB | math | 2021-03-22 | \- | 2021a\<br />2020a\<br />2019b\<br />2018b\<br />2018a\<br />2017a |
-| MDAnalysis | phys | 2020-04-21 | \- | 0.20.1 |
-| METIS | math | 2020-08-20 | \- | 5.1.0 |
-| MPFR | math | 2020-08-20 | \- | 4.0.2\<br />4.0.1 |
-| MUMPS | math | 2020-12-08 | \- | 5.2.1\<br />5.1.2 |
-| MUST | perf | 2019-01-25 | \- | 1.6.0-rc3 |
-| Mako | devel | 2020-08-11 | \- | 1.1.2\<br />1.1.0\<br />1.0.8\<br />1.0.7 |
-| Mathematica | math | 2018-11-22 | \- | 11.3.0\<br />11.2.0 |
-| Maven | devel | 2020-04-29 | \- | 3.6.3 |
-| Maxima | math | 2018-11-22 | \- | 5.42.1 |
-| Mercurial | tools | 2018-11-22 | \- | 4.6.1 |
-| Mesa | vis | 2020-08-11 | \- | 20.0.2\<br />19.1.7\<br />19.0.1\<br />18.1.1\<br />17.3.6 |
-| Meson | tools | 2021-02-17 | \- | 0.55.3\<br />0.53.2\<br />0.51.2\<br />0.50.0 |
-| Mesquite | math | 2020-02-12 | \- | 2.3.0 |
-| Miniconda2 | lang | 2018-11-22 | \- | 4.5.11 |
-| Miniconda3 | lang | 2019-10-17 | \- | 4.5.4 |
-| MongoDB | data | 2019-07-29 | \- | 4.0.3 |
-| NAMD | chem | 2018-11-22 | \- | 2.12 |
-| NASM | lang | 2021-02-17 | \- | 2.15.05\<br />2.14.02\<br />2.13.03\<br />2.13.01 |
-| NCCL | lib | 2021-03-17 | \- | 2.8.3\<br />2.4.8\<br />2.4.2\<br />2.3.7 |
-| NCO | tools | 2020-09-29 | \- | 4.9.3 |
-| NFFT | lib | 2019-08-09 | \- | 3.5.1 |
-| NLTK | data | 2018-12-05 | \- | 3.4 |
-| NLopt | numlib | 2020-08-28 | \- | 2.6.1\<br />2.4.2 |
-| NSPR | lib | 2020-08-11 | \- | 4.25\<br />4.21\<br />4.20 |
-| NSS | lib | 2020-08-11 | \- | 3.51\<br />3.45\<br />3.42.1\<br />3.39 |
-| NWChem | chem | 2018-11-22 | \- | 6.8.revision47\<br />6.6.revision27746 |
-| Nektar++ | math | 2020-02-19 | \- | 5.0.0 |
-| NetLogo | math | 2018-11-22 | \- | 6.0.4-64 |
-| Ninja | tools | 2021-02-17 | \- | 1.9.0\<br />1.10.1\<br />1.10.0 |
-| OPARI2 | perf | 2020-10-12 | \- | 2.0.5\<br />2.0.3 |
-| ORCA | chem | 2020-03-04 | \- | 4.2.1\<br />4.1.1 |
-| OTF2 | perf | 2020-10-12 | \- | 2.2\<br />2.1.1 |
-| Octave | math | 2019-11-08 | \- | 5.1.0 |
-| Octopus | chem | 2020-10-15 | \- | 8.4\<br />10.1 |
-| OpenBLAS | numlib | 2021-02-17 | \- | 0.3.9\<br />0.3.7\<br />0.3.5\<br />0.3.12\<br />0.3.1\<br />0.2.20 |
-| OpenBabel | chem | 2018-11-22 | \- | 2.4.1 |
-| OpenCV | vis | 2020-01-13 | \- | 4.0.1\<br />3.4.1 |
-| OpenFOAM | cae | 2020-09-23 | \- | v2006\<br />v1912\<br />v1806\<br />8\<br />7\<br />6\<br />5.0\<br />4.1\<br />2.3.1 |
-| OpenFOAM-Extend | cae | 2020-02-12 | \- | 4.0 |
-| OpenMPI | mpi | 2021-02-17 | \- | 4.0.5\<br />4.0.4\<br />4.0.3\<br />4.0.1\<br />3.1.6\<br />3.1.4\<br />3.1.3\<br />3.1.2\<br />3.1.1\<br />2.1.5\<br />2.1.2\<br />1.10.7 |
-| OpenMX | phys | 2020-12-08 | \- | 3.9.2 |
-| OpenMolcas | chem | 2020-10-12 | \- | 19.11\<br />18.09 |
-| OpenPGM | system | 2019-11-05 | \- | 5.2.122 |
-| OpenSSL | system | 2019-11-08 | \- | 1.1.1b\<br />1.0.2l |
-| PAPI | perf | 2020-10-12 | \- | 6.0.0\<br />5.7.0\<br />5.6.0 |
-| PCL | vis | 2019-08-13 | \- | 1.9.1 |
-| PCRE | devel | 2021-03-17 | \- | 8.44\<br />8.43\<br />8.41 |
-| PCRE2 | devel | 2020-08-11 | \- | 10.34\<br />10.33\<br />10.32 |
-| PDFCrop | tools | 2018-11-22 | \- | 0.4b |
-| PDT | perf | 2020-10-12 | \- | 3.25.1\<br />3.25 |
-| PETSc | numlib | 2020-12-08 | \- | 3.9.4\<br />3.9.3\<br />3.8.3\<br />3.7.7\<br />3.13.3\<br />3.12.4\<br />3.11.0\<br />3.10.5 |
-| PFFT | numlib | 2020-10-15 | \- | 1.0.8 |
-| PGI | compiler | 2020-02-07 | \- | 19.4\<br />19.10\<br />18.7\<br />18.4\<br />18.10\<br />17.7\<br />17.10 |
-| PLUMED | chem | 2020-08-11 | \- | 2.6.0\<br />2.5.1\<br />2.4.0 |
-| PLY | lib | 2019-02-26 | \- | 3.11 |
-| PMIx | lib | 2021-02-24 | \- | 3.1.5\<br />3.1.1 |
-| PROJ | lib | 2020-10-06 | \- | 6.2.1\<br />6.0.0\<br />5.0.0 |
-| Pandoc | tools | 2019-10-14 | \- | 2.5 |
-| Pango | vis | 2020-09-02 | \- | 1.44.7\<br />1.43.0\<br />1.42.4\<br />1.41.1 |
-| ParMETIS | math | 2020-02-12 | \- | 4.0.3 |
-| ParMGridGen | math | 2020-02-12 | \- | 1.0 |
-| ParaView | vis | 2020-11-12 | \- | 5.9.0-RC1\<br />5.8.0\<br />5.7.0\<br />5.6.2\<br />5.5.2\<br />5.4.1 |
-| Perl | lang | 2021-02-17 | \- | 5.32.0\<br />5.30.2\<br />5.30.0\<br />5.28.1\<br />5.28.0\<br />5.26.1 |
-| Pillow | vis | 2021-02-17 | \- | 8.0.1\<br />7.0.0\<br />6.2.1\<br />5.0.0 |
-| Pillow-SIMD | vis | 2018-11-22 | \- | 5.0.0 |
-| PnetCDF | data | 2019-03-06 | \- | 1.9.0 |
-| PyQt5 | vis | 2018-11-22 | \- | 5.10.1 |
-| PyTorch | devel | 2021-01-04 | \- | 1.6.0\<br />0.3.1 |
-| PyYAML | lib | 2020-04-16 | \- | 5.1.2\<br />5.1\<br />3.13\<br />3.12 |
-| Python | lang | 2021-02-17 | \- | 3.8.6\<br />3.8.2\<br />3.7.4\<br />3.7.2\<br />3.6.6\<br />3.6.4\<br />2.7.18\<br />2.7.16\<br />2.7.15\<br />2.7.14 |
-| Qhull | math | 2019-11-08 | \- | 2019.1\<br />2015.2 |
-| Qt | devel | 2018-11-22 | \- | 4.8.7 |
-| Qt5 | devel | 2020-08-11 | \- | 5.9.3\<br />5.14.1\<br />5.13.1\<br />5.12.3\<br />5.10.1 |
-| QuantumESPRESSO | chem | 2021-01-05 | \- | 6.6\<br />6.5\<br />6.4.1\<br />6.3\<br />6.2 |
-| Qwt | lib | 2020-09-24 | \- | 6.1.4 |
-| R | lang | 2020-10-06 | \- | 4.0.0\<br />3.6.2\<br />3.6.0\<br />3.5.1\<br />3.4.4 |
-| RDFlib | lib | 2020-09-29 | \- | 4.2.2 |
-| RELION | bio | 2019-02-27 | \- | 3.0\<br />2.1 |
-| ROOT | data | 2019-06-03 | \- | 6.14.06 |
-| Ruby | lang | 2019-11-14 | \- | 2.6.3\<br />2.6.1 |
-| SCOTCH | math | 2020-12-08 | \- | 6.0.9\<br />6.0.6\<br />6.0.5\<br />6.0.4\<br />5.1.12b |
-| SCons | devel | 2020-01-24 | \- | 3.1.1\<br />3.0.5\<br />3.0.1 |
-| SHARC | chem | 2019-01-07 | \- | 2.0 |
-| SIONlib | lib | 2020-10-12 | \- | 1.7.6\<br />1.7.4\<br />1.7.2 |
-| SIP | lang | 2018-11-22 | \- | 4.19.8\<br />4.19.12 |
-| SLEPc | numlib | 2020-02-27 | \- | 3.9.2\<br />3.12.2 |
-| SPM | math | 2018-11-22 | \- | 12-r7219 |
-| SQLite | devel | 2021-02-17 | \- | 3.33.0\<br />3.31.1\<br />3.29.0\<br />3.27.2\<br />3.26.0\<br />3.24.0\<br />3.21.0\<br />3.20.1 |
-| STAR-CCM+ | cae | 2021-03-19 | \- | 15.06.008\<br />15.04.010-R8\<br />15.02.007\<br />14.04.011\<br />14.02.012\<br />13.06.012-R8\<br />13.04.011\<br />13.02.013-R8 |
-| SUNDIALS | math | 2018-11-22 | \- | 2.7.0 |
-| SWASH | phys | 2020-03-18 | \- | 6.01\<br />5.01 |
-| SWIG | devel | 2020-10-06 | \- | 4.0.1\<br />3.0.12 |
-| ScaFaCoS | math | 2020-08-11 | \- | 1.0.1 |
-| ScaLAPACK | numlib | 2021-02-17 | \- | 2.1.0\<br />2.0.2 |
-| Scalasca | perf | 2021-02-02 | \- | 2.5\<br />2.4 |
-| SciPy-bundle | lang | 2021-02-17 | \- | 2020.11\<br />2020.03\<br />2019.10\<br />2019.03 |
-| Score-P | perf | 2020-10-19 | \- | 6.0\<br />4.0 |
-| Serf | tools | 2019-11-08 | \- | 1.3.9 |
-| Siesta | phys | 2020-02-27 | \- | 4.1-b4\<br />4.1-b3\<br />4.1 |
-| Six | lib | 2018-11-22 | \- | 1.11.0 |
-| Spark | devel | 2020-10-22 | \- | 3.0.1\<br />2.4.4\<br />2.4.3 |
-| Subversion | tools | 2019-11-08 | \- | 1.9.7\<br />1.12.0 |
-| SuiteSparse | numlib | 2020-09-02 | \- | 5.7.1\<br />5.6.0\<br />5.4.0\<br />5.1.2 |
-| SuperLU | numlib | 2019-01-15 | \- | 5.2.1 |
-| SuperLU_DIST | numlib | 2019-01-16 | \- | 6.1.0 |
-| SuperLU_MT | numlib | 2019-01-16 | \- | 3.1 |
-| Szip | tools | 2021-03-03 | \- | 2.1.1 |
-| Tcl | lang | 2021-02-17 | \- | 8.6.9\<br />8.6.8\<br />8.6.7\<br />8.6.10 |
-| TensorFlow | lib | 2021-03-15 | \- | 2.4.1\<br />2.3.1\<br />2.1.0\<br />2.0.0\<br />1.8.0\<br />1.15.0\<br />1.10.0 |
-| Tk | vis | 2021-02-17 | \- | 8.6.9\<br />8.6.8\<br />8.6.10 |
-| Tkinter | lang | 2021-02-17 | \- | 3.8.6\<br />3.8.2\<br />3.7.4\<br />3.7.2\<br />3.6.6\<br />3.6.4\<br />2.7.15\<br />2.7.14 |
-| TotalView | debugger | 2020-09-24 | \- | 8.14.1-8 |
-| Trilinos | numlib | 2019-02-26 | \- | 12.12.1 |
-| UCX | lib | 2021-02-24 | \- | 1.9.0\<br />1.8.0\<br />1.5.1 |
-| UDUNITS | phys | 2020-08-28 | \- | 2.2.26 |
-| UFL | cae | 2019-02-26 | \- | 2018.1.0 |
-| UnZip | tools | 2021-02-17 | \- | 6.0 |
-| VASP | phys | 2020-05-19 | \- | 5.4.4 |
-| VMD | vis | 2018-11-22 | \- | 1.9.3 |
-| VSEARCH | bio | 2018-11-22 | \- | 2.8.4 |
-| VTK | vis | 2020-10-06 | \- | 8.2.0\<br />8.1.1\<br />8.1.0\<br />5.10.1 |
-| VTune | tools | 2020-04-28 | \- | 2020\<br />2019\<br />2018 |
-| Valgrind | debugger | 2019-11-05 | \- | 3.14.0\<br />3.13.0 |
-| Vampir | tools | 2021-01-13 | \- | unstable\<br />9.9.0\<br />9.8.0\<br />9.7.1\<br />9.7.0\<br />9.6.1\<br />9.5.0\<br />9.11\<br />9.10.0 |
-| Voro++ | math | 2020-08-11 | \- | 0.4.6 |
-| WRF | geo | 2018-12-12 | \- | 3.8.1 |
-| Wannier90 | chem | 2020-12-14 | \- | 2.1.0\<br />2.0.1.1\<br />1.2 |
-| X11 | vis | 2021-02-17 | \- | 20201008\<br />20200222\<br />20190717\<br />20190311\<br />20180604\<br />20180131 |
-| XML-Parser | data | 2018-11-22 | \- | 2.44-01 |
-| XZ | tools | 2021-02-17 | \- | 5.2.5\<br />5.2.4\<br />5.2.3\<br />5.2.2 |
-| YAXT | tools | 2020-10-06 | \- | 0.6.2\<br />0.6.0 |
-| Yasm | lang | 2020-08-11 | \- | 1.3.0 |
-| ZeroMQ | devel | 2019-11-05 | \- | 4.3.2\<br />4.2.5 |
-| Zip | tools | 2021-03-17 | \- | 3.0 |
-| ace | lib | 2018-11-22 | \- | 6.5.0 |
-| ant | devel | 2020-09-02 | \- | 1.10.7\<br />1.10.1 |
-| archspec | tools | 2020-08-11 | \- | 0.1.0 |
-| arpack-ng | numlib | 2019-11-08 | \- | 3.7.0\<br />3.6.1\<br />3.5.0 |
-| asciidoc | base | 2018-11-22 | \- | 8.6.9 |
-| at-spi2-atk | vis | 2020-09-02 | \- | 2.34.1 |
-| at-spi2-core | vis | 2020-09-02 | \- | 2.34.0 |
-| auto_ml | lang | 2019-10-29 | \- | 2.9.9 |
-| basemap | vis | 2019-04-02 | \- | 1.0.7 |
-| binutils | tools | 2020-12-11 | \- | 2.35\<br />2.34\<br />2.32\<br />2.31.1\<br />2.30\<br />2.28\<br />2.27\<br />2.26 |
-| bzip2 | tools | 2021-02-17 | \- | 1.0.8\<br />1.0.6 |
-| cURL | tools | 2021-02-17 | \- | 7.72.0\<br />7.69.1\<br />7.66.0\<br />7.63.0\<br />7.60.0\<br />7.58.0 |
-| cairo | vis | 2020-08-28 | \- | 1.16.0\<br />1.14.12 |
-| cftime | data | 2019-07-17 | \- | 1.0.1 |
-| chrpath | tools | 2018-11-22 | \- | 0.16 |
-| ctags | devel | 2018-11-22 | \- | 5.8 |
-| cuDNN | numlib | 2021-03-17 | \- | 8.0.4.30\<br />7.6.4.38\<br />7.4.2.24\<br />7.1.4.18\<br />7.1.4\<br />7.0.5 |
-| ddt | tools | 2021-04-12 | \- | 20.2.1\<br />20.0.1\<br />18.2.2 |
-| dftd3-lib | chem | 2021-02-17 | \- | 0.9 |
-| dill | data | 2019-10-29 | \- | 0.3.1.1\<br />0.3.1 |
-| double-conversion | lib | 2021-03-17 | \- | 3.1.5\<br />3.1.4 |
-| ecCodes | tools | 2020-10-06 | \- | 2.8.2\<br />2.17.0 |
-| expat | tools | 2021-02-17 | \- | 2.2.9\<br />2.2.7\<br />2.2.6\<br />2.2.5 |
-| flair | vis | 2019-01-25 | \- | 2.3-0 |
-| flair-geoviewer | vis | 2019-01-25 | \- | 2.3-0 |
-| flatbuffers | devel | 2021-03-17 | \- | 1.12.0 |
-| flatbuffers-python | devel | 2021-03-19 | \- | 1.12 |
-| flex | lang | 2020-12-11 | \- | 2.6.4\<br />2.6.3\<br />2.6.0\<br />2.5.39 |
-| fontconfig | vis | 2021-02-17 | \- | 2.13.92\<br />2.13.1\<br />2.13.0\<br />2.12.6 |
-| foss | toolchain | 2021-02-17 | \- | 2020b\<br />2020a\<br />2019b\<br />2019a\<br />2018b\<br />2018a |
-| fosscuda | toolchain | 2021-02-17 | \- | 2020b\<br />2020a\<br />2019b\<br />2019a\<br />2018b |
-| freeglut | lib | 2019-11-08 | \- | 3.0.0 |
-| freetype | vis | 2021-02-17 | \- | 2.9.1\<br />2.9\<br />2.10.3\<br />2.10.1 |
-| future | lib | 2018-11-22 | \- | 0.16.0 |
-| gc | lib | 2020-08-11 | \- | 7.6.12\<br />7.6.10\<br />7.6.0 |
-| gcccuda | toolchain | 2021-02-17 | \- | 2020b\<br />2020a\<br />2019b\<br />2019a\<br />2018b |
-| gettext | tools | 2021-02-17 | \- | 0.21\<br />0.20.1\<br />0.19.8.1\<br />0.19.8 |
-| gflags | devel | 2020-09-29 | \- | 2.2.2 |
-| giflib | lib | 2021-03-17 | \- | 5.2.1 |
-| git | tools | 2021-03-17 | \- | 2.28.0\<br />2.23.0\<br />2.21.0\<br />2.19.1\<br />2.18.0\<br />2.16.1 |
-| git-cola | tools | 2018-11-22 | \- | 3.2 |
-| git-lfs | tools | 2019-06-26 | \- | 2.7.2 |
-| glew | devel | 2020-09-23 | \- | 2.1.0 |
-| glog | devel | 2020-09-29 | \- | 0.4.0 |
-| gmsh | vis | 2019-11-26 | \- | 4.4.1 |
-| gnuplot | vis | 2019-11-08 | \- | 5.2.6\<br />5.2.5\<br />5.2.4\<br />5.2.2 |
-| golf | toolchain | 2018-11-22 | \- | 2018a |
-| gomkl | toolchain | 2019-07-17 | \- | 2019a |
-| gompi | toolchain | 2021-02-17 | \- | 2020b\<br />2020a\<br />2019b\<br />2019a\<br />2018b\<br />2018a |
-| gompic | toolchain | 2021-02-17 | \- | 2020b\<br />2020a\<br />2019b\<br />2019a\<br />2018b |
-| gperf | devel | 2021-02-17 | \- | 3.1 |
-| gperftools | tools | 2018-11-22 | \- | 2.7 |
-| grib_api | data | 2018-11-22 | \- | 1.27.0 |
-| gzip | tools | 2020-08-11 | \- | 1.9\<br />1.8\<br />1.10 |
-| h5py | data | 2020-08-11 | \- | 2.9.0\<br />2.8.0\<br />2.7.1\<br />2.10.0 |
-| help2man | tools | 2020-12-11 | \- | 1.47.8\<br />1.47.6\<br />1.47.4\<br />1.47.16\<br />1.47.12\<br />1.47.10 |
-| hwloc | system | 2021-02-17 | \- | 2.2.0\<br />2.0.3\<br />1.11.8\<br />1.11.12\<br />1.11.11\<br />1.11.10 |
-| hypothesis | tools | 2021-02-17 | \- | 5.41.2\<br />4.44.2 |
-| icc | compiler | 2019-10-11 | \- | 2019.1.144\<br />2019.0.117\<br />2018.3.222\<br />2018.1.163 |
-| iccifort | toolchain | 2020-09-21 | \- | 2020.2.254\<br />2020.1.217\<br />2019.5.281\<br />2019.1.144\<br />2019.0.117\<br />2018.3.222\<br />2018.1.163 |
-| ifort | compiler | 2019-10-11 | \- | 2019.1.144\<br />2019.0.117\<br />2018.3.222\<br />2018.1.163 |
-| iimpi | toolchain | 2020-08-03 | \- | 2020a\<br />2019b\<br />2019a\<br />2018b\<br />2018a |
-| imkl | numlib | 2021-01-05 | \- | 2020.1.217\<br />2019.5.281\<br />2019.1.144\<br />2018.3.222\<br />2018.1.163 |
-| impi | mpi | 2020-08-13 | \- | 2019.7.217\<br />2018.5.288\<br />2018.4.274\<br />2018.3.222\<br />2018.1.163 |
-| intel | toolchain | 2020-08-03 | \- | 2020a\<br />2019b\<br />2019a\<br />2018b\<br />2018a |
-| intltool | devel | 2021-02-17 | \- | 0.51.0 |
-| iomkl | toolchain | 2021-01-05 | \- | 2020a\<br />2019a\<br />2018a |
-| iompi | toolchain | 2021-01-05 | \- | 2020a\<br />2019a\<br />2018a |
-| itac | tools | 2018-11-22 | \- | 2018.3.022 |
-| kim-api | chem | 2020-08-11 | \- | 2.1.3 |
-| libGLU | vis | 2020-08-11 | \- | 9.0.1\<br />9.0.0 |
-| libGridXC | chem | 2020-02-27 | \- | 0.8.5 |
-| libPSML | data | 2020-02-27 | \- | 1.1.8 |
-| libarchive | tools | 2021-02-17 | \- | 3.4.3 |
-| libcerf | math | 2019-11-08 | \- | 1.7\<br />1.5\<br />1.11 |
-| libcint | lib | 2019-01-09 | \- | 3.0.14 |
-| libdap | lib | 2020-09-29 | \- | 3.20.6 |
-| libdrm | lib | 2020-08-11 | \- | 2.4.99\<br />2.4.97\<br />2.4.92\<br />2.4.91\<br />2.4.100 |
-| libelf | devel | 2020-12-11 | \- | 0.8.13 |
-| libepoxy | lib | 2020-09-02 | \- | 1.5.4 |
-| libevent | lib | 2021-02-24 | \- | 2.1.8\<br />2.1.12\<br />2.1.11 |
-| libfabric | lib | 2021-02-17 | \- | 1.11.0 |
-| libffi | lib | 2021-02-17 | \- | 3.3\<br />3.2.1 |
-| libgd | lib | 2019-11-08 | \- | 2.2.5 |
-| libgeotiff | lib | 2020-10-06 | \- | 1.5.1\<br />1.4.2 |
-| libglvnd | lib | 2020-08-11 | \- | 1.2.0 |
-| libharu | lib | 2018-11-22 | \- | 2.3.0 |
-| libiconv | lib | 2021-03-03 | \- | 1.16 |
-| libjpeg-turbo | lib | 2021-02-17 | \- | 2.0.5\<br />2.0.4\<br />2.0.3\<br />2.0.2\<br />2.0.0\<br />1.5.3\<br />1.5.2 |
-| libmatheval | lib | 2020-08-11 | \- | 1.1.11 |
-| libpciaccess | system | 2021-02-17 | \- | 0.16\<br />0.14 |
-| libpng | lib | 2021-02-17 | \- | 1.6.37\<br />1.6.36\<br />1.6.34\<br />1.6.32 |
-| libreadline | lib | 2021-02-17 | \- | 8.0\<br />7.0 |
-| libsigc++ | devel | 2020-09-24 | \- | 2.10.1 |
-| libsndfile | lib | 2020-08-28 | \- | 1.0.28 |
-| libsodium | lib | 2019-11-05 | \- | 1.0.17\<br />1.0.16 |
-| libssh2 | tools | 2018-11-22 | \- | 1.8.0 |
-| libtirpc | lib | 2020-09-29 | \- | 1.2.6 |
-| libtool | lib | 2021-02-17 | \- | 2.4.6 |
-| libunistring | lib | 2020-08-11 | \- | 0.9.7\<br />0.9.10 |
-| libunwind | lib | 2020-08-11 | \- | 1.3.1\<br />1.2.1 |
-| libvdwxc | chem | 2020-01-15 | \- | 0.4.0 |
-| libxc | chem | 2021-01-05 | \- | 4.3.4\<br />4.2.3\<br />3.0.1 |
-| libxml++ | lib | 2020-09-24 | \- | 2.40.1 |
-| libxml2 | lib | 2021-02-17 | \- | 2.9.9\<br />2.9.8\<br />2.9.7\<br />2.9.4\<br />2.9.10 |
-| libxslt | lib | 2020-10-27 | \- | 1.1.34\<br />1.1.33\<br />1.1.32 |
-| libxsmm | math | 2019-10-14 | \- | 1.8.3\<br />1.10 |
-| libyaml | lib | 2020-04-16 | \- | 0.2.2\<br />0.2.1\<br />0.1.7 |
-| likwid | tools | 2020-10-14 | \- | 5.0.1 |
-| lo2s | perf | 2020-01-27 | \- | 1.3.0\<br />1.2.2\<br />1.1.1\<br />1.0.2\<br />1.0.1 |
-| log4cxx | lang | 2020-02-18 | \- | 0.10.0 |
-| lpsolve | math | 2018-11-22 | \- | 5.5.2.5 |
-| lz4 | lib | 2020-08-11 | \- | 1.9.2\<br />1.9.1 |
-| magma | math | 2021-01-04 | \- | 2.5.4\<br />2.3.0 |
-| makedepend | devel | 2018-11-22 | \- | 1.0.5 |
-| matplotlib | vis | 2021-02-17 | \- | 3.3.3\<br />3.2.1\<br />3.1.1\<br />3.0.3\<br />3.0.0\<br />2.1.2 |
-| mkl-dnn | lib | 2018-11-22 | \- | 0.13 |
-| molmod | math | 2020-08-11 | \- | 1.4.5 |
-| motif | vis | 2018-11-22 | \- | 2.3.8 |
-| ncdf4 | math | 2020-10-06 | \- | 1.17 |
-| ncurses | devel | 2021-02-17 | \- | 6.2\<br />6.1\<br />6.0 |
-| netCDF | data | 2021-03-03 | \- | 4.7.4\<br />4.7.1\<br />4.6.2\<br />4.6.1\<br />4.6.0 |
-| netCDF-Fortran | data | 2021-03-04 | \- | 4.5.3\<br />4.5.2\<br />4.4.5\<br />4.4.4 |
-| netcdf4-python | data | 2019-07-17 | \- | 1.4.3 |
-| nettle | lib | 2020-01-24 | \- | 3.5.1\<br />3.4.1\<br />3.4 |
-| nextstrain | bio | 2020-07-20 | \- | 2.0.0.post1 |
-| nfft | math | 2018-11-28 | \- | 3.3.2DLR |
-| nsync | devel | 2021-03-17 | \- | 1.24.0 |
-| numactl | tools | 2021-02-17 | \- | 2.0.13\<br />2.0.12\<br />2.0.11 |
-| numba | lang | 2020-09-25 | \- | 0.47.0 |
-| numeca | cae | 2018-11-22 | \- | all |
-| nvidia-nsight | tools | 2020-01-21 | \- | 2019.3.1 |
-| p7zip | tools | 2018-11-22 | \- | 9.38.1 |
-| parallel | tools | 2020-02-25 | \- | 20190922\<br />20190622\<br />20180822 |
-| patchelf | tools | 2019-08-09 | \- | 0.9 |
-| petsc4py | tools | 2019-02-26 | \- | 3.9.1 |
-| pigz | tools | 2018-11-22 | \- | 2.4 |
-| pixman | vis | 2020-08-28 | \- | 0.38.4\<br />0.38.0\<br />0.34.0 |
-| pkg-config | devel | 2021-02-17 | \- | 0.29.2 |
-| pkgconfig | devel | 2021-03-17 | \- | 1.5.1\<br />1.3.1 |
-| pocl | lib | 2020-02-19 | \- | 1.4 |
-| pompi | toolchain | 2018-11-22 | \- | 2018.04 |
-| protobuf | devel | 2021-03-17 | \- | 3.6.1.2\<br />3.6.1\<br />3.14.0\<br />3.10.0 |
-| protobuf-python | devel | 2021-03-17 | \- | 3.14.0\<br />3.10.0 |
-| pybind11 | lib | 2021-02-17 | \- | 2.6.0\<br />2.4.3\<br />2.2.4 |
-| pyscf | chem | 2019-11-13 | \- | 1.6.1\<br />1.6.0 |
-| pytecplot | data | 2020-04-06 | \- | 1.0.0 |
-| pytest | tools | 2019-02-26 | \- | 3.8.0 |
-| qrupdate | numlib | 2019-11-08 | \- | 1.1.2 |
-| re2c | tools | 2020-08-11 | \- | 1.3\<br />1.2.1 |
-| rgdal | geo | 2019-11-27 | \- | 1.4-4 |
-| rstudio | lang | 2020-02-18 | \- | 1.2.5001\<br />1.2.1335\<br />1.1.456 |
-| scikit-learn | data | 2020-09-24 | \- | 0.21.3 |
-| scorep_plugin_fileparser | perf | 2018-11-22 | \- | 1.3.1 |
-| sf | lib | 2020-10-06 | \- | 0.9-5 |
-| slepc4py | tools | 2019-02-26 | \- | 3.9.0 |
-| snakemake | tools | 2020-04-16 | \- | 5.7.1\<br />5.14.0 |
-| snappy | lib | 2021-03-17 | \- | 1.1.8\<br />1.1.7 |
-| source-highlight | tools | 2018-11-22 | \- | 3.1.8 |
-| spacy | lang | 2018-12-05 | \- | 2.0.18 |
-| spglib | chem | 2019-12-12 | \- | 1.14.1 |
-| tbb | lib | 2020-08-11 | \- | 2020.1\<br />2019-U4\<br />2018-U5 |
-| tcsh | tools | 2018-11-22 | \- | 6.20.00 |
-| tecplot360ex | vis | 2020-07-20 | \- | 2019r1 |
-| texinfo | devel | 2020-08-11 | \- | 6.7\<br />6.6\<br />6.5 |
-| tmux | tools | 2021-04-09 | \- | 3.1c\<br />2.3 |
-| torchvision | vis | 2018-11-22 | \- | 0.2.1 |
-| tqdm | lib | 2020-09-29 | \- | 4.41.1 |
-| typing-extensions | devel | 2021-03-19 | \- | 3.7.4.3 |
-| utf8proc | lib | 2019-11-08 | \- | 2.3.0 |
-| util-linux | tools | 2021-02-17 | \- | 2.36\<br />2.35\<br />2.34\<br />2.33\<br />2.32\<br />2.31.1 |
-| wheel | tools | 2018-11-22 | \- | 0.31.1\<br />0.31.0 |
-| x264 | vis | 2020-08-11 | \- | 20191217\<br />20190925\<br />20190413\<br />20181203\<br />20180128 |
-| x265 | vis | 2020-08-11 | \- | 3.3\<br />3.2\<br />3.0\<br />2.9\<br />2.6 |
-| xbitmaps | devel | 2018-11-22 | \- | 1.1.1 |
-| xmlf90 | data | 2020-02-27 | \- | 1.5.4 |
-| xorg-macros | devel | 2021-02-17 | \- | 1.19.2\<br />1.19.1 |
-| xprop | vis | 2019-11-08 | \- | 1.2.4\<br />1.2.3\<br />1.2.2 |
-| xproto | devel | 2018-11-22 | \- | 7.0.31 |
-| yaff | chem | 2020-08-11 | \- | 1.6.0 |
-| zlib | lib | 2020-12-11 | \- | 1.2.8\<br />1.2.11 |
-| zsh | tools | 2021-01-06 | \- | 5.8 |
-| zstd | lib | 2020-08-11 | \- | 1.4.4 |
-
-### Classic Environment
-
-<span class="twiki-macro TABLE">headerrows= 1"</span> <span
-class="twiki-macro EDITTABLE"
-format="| text, 30, Software | text, 40, Kategorie | text, 30, Letzte Änderung | text, 30, SGI-UV | text, 30, Taurus | "
-changerows="on"></span>
-
-| Software | Category | Last change | Venus | Taurus |
-|:-------------------------|:-------------|:------------|:-----------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| AVS-Express | applications | 2015-06-26 | \- | mpepst8.2\<br />8.2 |
-| FPLO | applications | 2018-04-13 | \- | 18.00-53\<br />14.00-49 |
-| VirtualGL | tools | 2013-10-02 | \- | |
-| abaqus | applications | 2018-04-19 | 2017\<br />2016 | *2018* \<br /> 6.9-EF1\<br />6.13\<br />6.12\<br />2017\<br />2016 |
-| abinit | applications | 2013-11-21 | 7.2.1 | 7.2.1 |
-| ace | lib | 2018-11-22 | \- | 6.3.3 |
-| adolc | libraries | 2014-07-24 | *2.5.0* \<br /> 2.4.1 | *2.5.0* \<br /> 2.4.1 |
-| afni | applications | 2014-07-01 | \- | 2011-12-21-1014 |
-| amber | applications | 2017-10-06 | \- | 15 |
-| ansys | applications | 2018-09-04 | 18.0\<br />17.1\<br />16.1 | 19.0\<br />18.2\<br />18.1\<br />18.0\<br />17.2\<br />17.1\<br />17.0\<br />16.1 |
-| ansysem | applications | 2017-07-20 | \- | 16.0 |
-| asm | tools | 2017-03-17 | \- | 5.2 |
-| autoconf | tools | 2013-10-30 | 2.69 | 2.69 |
-| automake | tools | 2014-09-11 | 1.14\<br />1.12.2\<br />1.12 | 1.14\<br />1.12.2 |
-| autotools | tools | 2017-02-01 | \- | default\<br />2015 |
-| bazel | compilers | 2017-07-13 | \- | 0.5.2 |
-| bison | libraries | 2015-03-11 | \- | 3.0.4 |
-| blcr | tools | 2016-03-02 | \- | |
-| boost | libraries | 2019-03-29 | *1.49* \<br /> 1.69.0\<br />1.54\<br />1.51.0 | *1.54.0* \<br /> 1.66.0\<br />1.65.1\<br />1.65.0\<br />1.64.0\<br />1.63.0\<br />1.62.0\<br />1.61.0\<br />1.60.0\<br />1.59.0\<br />1.58.0\<br />1.57.0\<br />1.56.0\<br />1.55.0\<br />1.49 |
-| bowtie | applications | 2013-01-16 | 0.12.8 | \- |
-| bullxmpi | libraries | 2016-10-14 | \- | *1.2.8.4* \<br /> 1.2.9.2 |
-| casita | tools | 2017-06-08 | \- | 1.9 |
-| cdo | tools | 2013-04-08 | 1.6.0 | \- |
-| ceph | libraries | 2017-01-13 | \- | 11.1 |
-| cereal | libraries | 2016-12-07 | \- | 1.2.1 |
-| cg | libraries | 2015-09-18 | \- | 3.1 |
-| cgal | libraries | 2018-03-08 | \- | 4.11.1 |
-| clFFT | libraries | 2017-07-12 | \- | 2.12.2dev\<br />2.12.2\<br />2.12.1\<br />2.12.0\<br />2.10.0 |
-| clang | compilers | 2018-08-20 | \- | 4.0.0 |
-| cmake | tools | 2019-04-03 | 3.3.1\<br />3.11.4\<br />2.8.2\<br />2.8.12.2\<br />2.8.11 | *3.10.1* \<br /> 3.9.0\<br />3.6.2\<br />3.3.1\<br />2.8.2\<br />2.8.12.2\<br />2.8.11 |
-| collectl | tools | 2017-12-05 | 4.2.0\<br />4.1.2\<br />3.6.7\<br />3.5.1 | 4.2.0\<br />4.1.2\<br />3.6.7\<br />3.5.1 |
-| comsol | applications | 2018-04-20 | \- | *5.3a* \<br /> 5.3 |
-| conn | libraries | 2017-07-12 | \- | 17f |
-| cp2k | applications | 2017-12-05 | 2.5 | *5.1* \<br /> r16298\<br />r15503\<br />r14075\<br />r13178\<br />3.0\<br />2.6.2\<br />2.6\<br />2.4\<br />2.3\<br />130326 |
-| cpufrequtils | libraries | 2017-02-16 | \- | gcc5.3.0 |
-| ctool | libraries | 2013-04-17 | 2.12 | 2.12 |
-| cube | tools | 2018-05-31 | *4.3* | *4.3* \<br /> 4.4 |
-| cuda | libraries | 2018-06-07 | \- | *9.2.88* \<br /> 9.1.85\<br />9.0.176\<br />8.0.61\<br />8.0.44\<br />7.5.18\<br />7.0.28 |
-| curl | libraries | 2013-01-18 | 7.28.1 | \- |
-| cusp | libraries | 2014-04-22 | \- | 0.4.0\<br />0.3.1 |
-| cython | libraries | 2016-08-26 | \- | 0.24.1\<br />0.24\<br />0.19.2 |
-| dalton | applications | 2016-04-07 | \- | 2016.0 |
-| darshan | tools | 2017-09-02 | \- | darshan-3.1.4 |
-| dash | libraries | 2019-02-14 | \- | dash |
-| dataheap | libraries | 2017-01-12 | \- | 1.2\<br />1.1 |
-| ddt | tools | 2021-04-12 | 4.2\<br />4.0\<br />3.2.1 | *18.0.1* \<br /> 6.0.5\<br />6.0 |
-| dftb+ | applications | 2017-06-26 | \- | mpi\<br />1.3\<br />1.2.2 |
-| dmtcp | tools | 2017-10-18 | \- | *2.5.1-ib* \<br /> ib-id |
-| doxygen | tools | 2016-01-27 | \- | 1.8.11\<br />1.7.4 |
-| dune | libraries | 2014-05-28 | \- | 2.2.1 |
-| dyninst | libraries | 2016-02-16 | 8.1.1 | 8.2.1\<br />8.1.1 |
-| eigen | libraries | 2017-03-23 | \- | 3.3.3\<br />3.2.0 |
-| eirods | tools | 2013-12-11 | \- | 3.1 |
-| eman2 | applications | 2017-06-21 | \- | 2.2 |
-| ensight | applications | 2015-07-13 | \- | 10.1.5a\<br />10.0 |
-| extrae | applications | 2017-01-03 | \- | 3.4.1 |
-| fftw | libraries | 2017-03-18 | \- | 3.3.6pl1\<br />3.3.5\<br />3.3.4 |
-| firestarter | applications | 2016-04-20 | \- | 1.4 |
-| flex | lang | 2020-12-11 | \- | 2.5.39 |
-| fme | applications | 2017-04-21 | \- | 2017 |
-| freecad | applications | 2014-05-12 | \- | *0.14* \<br /> 0.13 |
-| freeglut | lib | 2019-11-08 | 2.8.1 | 2.8.1 |
-| freesurfer | applications | 2015-12-04 | \- | *5.3.0* \<br /> 5.1.0 |
-| fsl | libraries | 2018-01-17 | \- | 5.0.5\<br />5.0.4\<br />5.0.10 |
-| ga | libraries | 2015-06-22 | \- | 5.2 |
-| gamess | applications | 2014-12-11 | \- | 2013 |
-| gams | applications | 2017-07-10 | \- | 24.8\<br />24.3.3 |
-| gaussian | applications | 2017-06-01 | g16\<br />g09d01\<br />g09b01\<br />g09\<br />g03 | *g16* \<br /> g09d01\<br />g09b01\<br />g09 |
-| gautomatch | applications | 2017-06-21 | \- | 0.53 |
-| gcc | compilers | 2019-04-02 | 8.3.0\<br />7.1.0\<br />6.3.0\<br />5.5.0\<br />4.9.3\<br />4.9.1\<br />4.8.2\<br />4.8.0\<br />4.7.1 | *7.1.0* \<br /> 6.3.0\<br />6.2.0\<br />5.5.0\<br />5.3.0\<br />5.2.0\<br />5.1.0\<br />4.9.3\<br />4.9.1\<br />4.8.2\<br />4.8.0\<br />4.7.1\<br />4.6.2 |
-| gcl | compilers | 2017-03-13 | \- | 2.6.12 |
-| gcovr | tools | 2015-02-12 | *3.2* | *3.2* |
-| gctf | applications | 2017-06-21 | \- | 0.50 |
-| gdb | tools | 2017-08-03 | 7.9.1 | 7.5 |
-| gdk | tools | 2015-12-14 | \- | 352 |
-| geany | tools | 2014-05-12 | \- | 1.24.1 |
-| ghc | compilers | 2015-01-16 | 7.6.3 | 7.6.3 |
-| git | tools | 2021-03-17 | *1.8.3.1* \<br /> 2.17.1\<br />1.7.7\<br />1.7.4.1\<br />1.7.3.2 | *2.15.1* \<br /> 2.7.3\<br />1.9.0 |
-| glib | libraries | 2016-10-27 | \- | 2.50.1\<br />2.44.1 |
-| gmap | tools | 2018-07-13 | \- | 2018-07-04 |
-| gmock | tools | 2013-10-17 | \- | *1.6.0* |
-| gnuplot | vis | 2019-11-08 | 4.6.1\<br />4.4.0 | 4.6.1\<br />4.4.0 |
-| gpaw | applications | 2016-02-19 | \- | 0.11.0 |
-| gperftools | tools | 2018-11-22 | \- | gperftools-2.6.1.lua |
-| gpi2 | libraries | 2018-04-25 | \- | *git* \<br /> 1.3.0\<br />1.2.2\<br />1.1.0 |
-| gpi2-mpi | libraries | 2015-03-30 | \- | *1.1.1* |
-| gpudevkit | libraries | 2016-07-25 | \- | 352-79 |
-| grads | applications | 2014-08-05 | 2.0.2 | \- |
-| grid | tools | 2014-12-09 | \- | 2012 |
-| gromacs | applications | 2018-01-22 | \- | *5.1.3* \<br /> 5.1.4\<br />5.1.1\<br />5.1\<br />4.6.7\<br />4.5.5\<br />3.3.3 |
-| gsl | libraries | 2015-01-28 | \- | 1.16 |
-| gulp | applications | 2015-10-09 | \- | 4.3 |
-| gurobi | applications | 2017-06-28 | 7.0.2\<br />6.0.4 | 7.0.2\<br />6.0.4 |
-| h5utils | tools | 2014-08-18 | \- | 1.12.1 |
-| haskell-platform | tools | 2015-01-16 | 2013.2.0.0 | 2013.2.0.0 |
-| hdeem | libraries | 2018-01-22 | \- | *deprecated* \<br /> 2.2.20ms\<br />2.2.2\<br />2.2.19ms\<br />2.2.16ms\<br />2.2.15ms\<br />2.2.13ms\<br />2.1.9ms\<br />2.1.5\<br />2.1.4\<br />2.1.10ms |
-| hdf5 | libraries | 2018-02-09 | 1.8.14\<br />1.8.10 | hdfview\<br />1.8.19\<br />1.8.18\<br />1.8.16\<br />1.8.15\<br />1.8.14\<br />1.8.10\<br />1.6.5\<br />1.10.1 |
-| hip | libraries | 2018-08-27 | \- | git |
-| hoomd-blue | applications | 2016-07-29 | \- | 2.0.1 |
-| hpc-x | libraries | 2017-04-10 | \- | 1.8.0 |
-| hpctoolkit | tools | 2013-05-28 | 5.3.2 | \- |
-| hpx | libraries | 2017-09-15 | \- | hpx |
-| htop | tools | 2016-11-04 | 1.0.2 | 1.0.2 |
-| hwloc | system | 2021-02-17 | \- | 1.11.8\<br />1.11.6 |
-| hyperdex | tools | 2015-08-20 | \- | default\<br />1.8.1\<br />1.7.1 |
-| hyperopt | libraries | 2018-03-19 | \- | 0.1 |
-| imagemagick | applications | 2015-03-18 | \- | 6.9.0 |
-| intel | toolchain | 2020-08-03 | *2013* \<br /> 2017.2.174\<br />2016.2.181\<br />2016.1.150\<br />2015.3.187\<br />2015.2.164\<br />2013-sp1\<br />11.1.069 | *2018.1.163* \<br /> 2018.0.128\<br />2017.4.196\<br />2017.2.174\<br />2017.1.132\<br />2017.0.020\<br />2016.2.181\<br />2016.1.150\<br />2015.3.187\<br />2015.2.164\<br />2015.1.133\<br />2013-sp1\<br />2013\<br />12.1\<br />11.1.069 |
-| intelmpi | libraries | 2017-11-21 | \- | *2018.1.163* \<br /> 5.1.3.181\<br />5.1.2.150\<br />5.0.3.048\<br />5.0.1.035\<br />2018.0.128\<br />2017.3.196\<br />2017.2.174\<br />2017.1.132\<br />2017.0.098\<br />2013 |
-| iotop | tools | 2013-07-16 | \- | 0.5 |
-| iotrack | tools | 2013-07-16 | \- | 0.5 |
-| java | tools | 2015-11-17 | jre1.6.0-21\<br />jdk1.8.0-66\<br />jdk1.7.0-25\<br />jdk1.7.0-03 | jdk1.8.0-66\<br />jdk1.7.0-25 |
-| julia | compilers | 2018-05-15 | \- | *0.6.2* \<br /> 0.4.6\<br />0.4.1 |
-| knime | applications | 2017-03-20 | \- | 3.3.1\<br />3.1.0\<br />2.11.3-24\<br />2.11.3 |
-| lammps | applications | 2017-08-31 | 2014sep\<br />2014jun\<br />2013feb | *2016jul* \<br /> 2017aug\<br />2016may\<br />2015aug\<br />2014sep\<br />2014feb\<br />2013feb\<br />2013aug |
-| lbfgsb | libraries | 2013-08-02 | *3.0* \<br /> 2.1 | *3.0* \<br /> 2.1 |
-| libnbc | libraries | 2014-05-28 | \- | 1.1.1 |
-| libssh2 | tools | 2018-11-22 | \- | 1.8.0 |
-| libsvm | tools | 2015-11-20 | \- | 3.20 |
-| libtool | lib | 2021-02-17 | \- | 2.4.2 |
-| libunwind | lib | 2020-09-25 | \- | 1.1 |
-| libxc | chem | 2021-01-05 | \- | 3.0.0\<br />2.2.2 |
-| liggghts | applications | 2014-05-28 | \- | 2.3.8\<br />2.3.2 |
-| llview | tools | 2015-01-28 | \- | |
-| llvm | compilers | 2018-04-20 | \- | *4.0.0* \<br /> ykt\<br />3.9.1\<br />3.7\<br />3.4\<br />3.3.1 |
-| lo2s | perf | 2020-01-27 | \- | 2018-02-13\<br />2017-12-06\<br />2017-08-07 |
-| ls-dyna | applications | 2017-12-05 | *9.0.1* \<br /> 971\<br />7.0 | *10.0.0* \<br /> dev-121559\<br />971\<br />9.0.1\<br />8.1\<br />7.1.2\<br />7.1.1\<br />7.0\<br />6.0 |
-| ls-dyna-usermat | applications | 2016-08-25 | \- | 9.0.1-s\<br />9.0.1-d\<br />7.1.2-d\<br />7.1.1-s\<br />7.1.1-d |
-| ls-prepost | applications | 2016-08-22 | \- | *4.3* |
-| lumerical | applications | 2016-06-01 | \- | fdtd-8.11.422 |
-| m4 | tools | 2013-10-30 | \- | 1.4.16 |
-| m4ri | libraries | 2017-03-27 | \- | 20140914 |
-| make | tools | 2018-02-21 | \- | 4.2 |
-| map | tools | 2016-11-22 | \- | 6.0.5 |
-| mathematica | applications | 2015-10-16 | \- | *10.0* \<br /> 8.0 |
-| matlab | applications | 2019-02-26 | deprecated.lua\<br />2017a.lua\<br />2016b.lua\<br />2015b.lua\<br />2014a.lua\<br />2013a.lua\<br />2012a.lua\<br />2010b.lua\<br />2010a.lua | \- |
-| maxima | applications | 2017-03-15 | \- | 5.39.0 |
-| med | libraries | 2017-09-27 | \- | 3.2.0 |
-| meep | applications | 2015-04-23 | \- | 1.3\<br />1.2.1 |
-| mercurial | tools | 2014-10-22 | 3.1.2 | 3.1.2 |
-| metis | libraries | 2013-12-17 | 5.1.0 | 5.1.0\<br />4.0.3 |
-| mkl | libraries | 2017-05-10 | 2013 | 2017\<br />2015\<br />2013 |
-| modenv | environment | 2020-03-25 | \- | scs5.lua\<br />ml.lua\<br />hiera.lua\<br />classic.lua |
-| mongodb | applications | 2018-03-19 | \- | 3.6.3 |
-| motioncor2 | applications | 2017-06-21 | \- | 01-30-2017 |
-| mpb | applications | 2014-08-19 | \- | 1.4.2 |
-| mpi4py | libraries | 2016-05-02 | 1.3.1 | 2.0.0\<br />1.3.1 |
-| mpirt | libraries | 2017-11-21 | \- | *2018.1.163* \<br /> 5.1.3.181\<br />5.1.2.150\<br />5.0.3.048\<br />5.0.1.035\<br />2018.0.128\<br />2017.3.196\<br />2017.2.174\<br />2017.1.132\<br />2017.0.098\<br />2013 |
-| mumps | libraries | 2017-05-11 | \- | 5.1.1 |
-| must | tools | 2018-02-01 | \- | 1.5.0\<br />1.4.0 |
-| mvapich2 | libraries | 2017-05-23 | \- | 2.2 |
-| mysql | tools | 2013-12-06 | \- | 6.0.11 |
-| namd | applications | 2015-09-08 | \- | *2.10* \<br /> 2.9 |
-| nco | tools | 2013-08-01 | 4.3.0 | \- |
-| nedit | tools | 2013-04-30 | 5.6\<br />5.5 | 5.6\<br />5.5 |
-| netbeans | applications | 2018-03-07 | \- | 8.2 |
-| netcdf | libraries | 2018-02-09 | 4.1.3 | 4.6.0\<br />4.4.0\<br />4.3.3.1\<br />4.1.3 |
-| netlogo | applications | 2017-08-08 | \- | 6.0.1\<br />5.3.0\<br />5.2.0 |
-| nsys | tools | 2018-09-11 | \- | 2018.1.1.36\<br />2018.0.1.173 |
-| numeca | cae | 2018-11-22 | \- | all |
-| nwchem | applications | 2016-02-15 | 6.3 | *6.6* \<br /> custom\<br />6.5patched\<br />6.5\<br />6.3.r2\<br />6.3 |
-| octave | applications | 2018-03-23 | \- | 3.8.1 |
-| octopus | applications | 2017-03-07 | \- | 6.0 |
-| openbabel | applications | 2014-03-07 | 2.3.2 | 2.3.2 |
-| opencl | libraries | 2015-07-13 | \- | 1.2-4.4.0.117 |
-| openems | applications | 2017-08-01 | \- | 0.0.35 |
-| openfoam | applications | 2020-10-15 | \- | *2.3.0* \<br /> v1712\<br />v1706\<br />5.0\<br />4.0\<br />2.4.0\<br />2.3.1\<br />2.2.2 |
-| openmpi | libraries | 2018-02-01 | \- | *1.10.2* \<br /> 3.0.0\<br />2.1.1\<br />2.1.0\<br />1.8.8\<br />1.10.4\<br />1.10.3 |
-| opentelemac | applications | 2017-09-29 | \- | v7p2r3\<br />v7p1r1 |
-| oprofile | tools | 2013-06-05 | 0.9.8 | \- |
-| orca | applications | 2017-07-27 | \- | 4.0.1\<br />4.0.0.2\<br />3.0.3 |
-| otf2 | libraries | 2018-02-12 | \- | *2.0* \<br /> 2.1\<br />1.4\<br />1.3 |
-| papi | libraries | 2017-11-06 | 5.1.0 | 5.5.1\<br />5.4.3\<br />5.4.1 |
-| parallel | tools | 2020-02-25 | \- | 20170222 |
-| paraview | applications | 2016-03-03 | \- | *4.1.0* \<br /> 4.0.1 |
-| parmetis | libraries | 2018-01-12 | \- | 4.0.3 |
-| pasha | applications | 2013-11-14 | 1.0.9 | \- |
-| pathscale | compilers | 2016-03-04 | \- | enzo-6.0.858\<br />enzo-6.0.749 |
-| pdt | tools | 2015-09-18 | 3.18.1 | 3.18.1 |
-| perf | tools | 2016-06-14 | | |
-| perl | applications | 2015-01-29 | 5.20.1\<br />5.12.1 | 5.20.1\<br />5.12.1 |
-| petsc | libraries | 2018-03-19 | *3.3-p6* \<br /> 3.1-p8 | *3.3-p6* \<br /> 3.8.3-64bit\<br />3.8.3\<br />3.4.4\<br />3.4.3\<br />3.3-p7-64bit\<br />3.3-p7\<br />3.2-p7\<br />3.1-p8-p\<br />3.1-p8 |
-| pgi | compilers | 2018-09-07 | 14.9\<br />14.7\<br />14.6\<br />14.3\<br />13.4 | *18.3* \<br /> 17.7\<br />17.4\<br />17.1\<br />16.9\<br />16.5\<br />16.4\<br />16.10\<br />16.1\<br />15.9\<br />14.9 |
-| pigz | tools | 2018-11-22 | \- | 2.3.4 |
-| prope-env | tools | 2017-05-02 | \- | *.1.0* |
-| protobuf | devel | 2021-03-17 | \- | 3.5.0\<br />3.2.0 |
-| pycuda | libraries | 2016-10-28 | \- | *2016.1.2* \<br /> 2013.1.1\<br />2012.1 |
-| pyslurm | libraries | 2017-11-09 | \- | 16.05.8 |
-| python | libraries | 2018-01-17 | 3.6\<br />3.3.0\<br />2.7.5\<br />2.7 | *3.6* \<br /> intelpython3\<br />intelpython2\<br />3.5.2\<br />3.4.3\<br />3.3.0\<br />3.1.2\<br />2.7.6\<br />2.7.5\<br />2.7 |
-| q-chem | applications | 2016-12-12 | \- | 4.4 |
-| qt | libraries | 2016-10-26 | \- | *4.8.1* \<br /> 5.4.1\<br />4.8.7 |
-| quantum_espresso | applications | 2016-09-13 | *5.0.3* \<br /> 5.0.2 | 5.3.0\<br />5.1.2\<br />5.0.3 |
-| r | applications | 2016-02-18 | \- | 3.2.1\<br />2.15.3 |
-| ramdisk | tools | 2016-07-21 | 1.0 | \- |
-| read-nvml-clocks-pci | tools | 2018-02-22 | \- | 1.0 |
-| readex | tools | 2018-06-13 | \- | pre\<br />beta-1806\<br />beta-1805\<br />beta-1804\<br />beta\<br />alpha |
-| redis | tools | 2016-06-28 | \- | 3.2.1 |
-| relion | applications | 2017-06-21 | \- | 2.1 |
-| repoclient | applications | 2017-01-18 | \- | 1.4.1 |
-| ripgrep | tools | 2017-02-17 | \- | 0.3.2 |
-| robinhood | tools | 2017-05-04 | \- | 2.4.3 |
-| root | applications | 2015-02-27 | \- | 6.02.05 |
-| rstudio | lang | 2020-02-18 | \- | 0.98.1103 |
-| ruby | tools | 2014-07-21 | \- | 2.1.2 |
-| samrai | libraries | 2016-04-22 | \- | 3.10.0 |
-| samtools | tools | 2018-07-13 | 0.1.18 | 1.8 |
-| scafes | libraries | 2017-05-05 | *2.3.0* \<br /> 2.2.0\<br />2.0.0\<br />1.0.0 | *2.3.0* \<br /> 2.2.0\<br />2.1.0\<br />2.0.1\<br />2.0.0\<br />1.0.0 |
-| scala | compilers | 2015-06-22 | \- | 2.11.4\<br />2.10.4 |
-| scalapack | libraries | 2013-11-21 | 2.0.2 | \- |
-| scalasca | tools | 2018-02-06 | \- | *2.3.1* |
-| scons | tools | 2015-11-19 | 2.3.4 | 2.4.1\<br />2.3.4 |
-| scorep | tools | 2018-10-01 | 1.3.0 | *3.0* \<br /> try\<br />trunk\<br />ompt\<br />java\<br />dev-io\<br />3.1 |
-| scorep-apapi | libraries | 2018-01-09 | \- | gcc-2018-01-09 |
-| scorep-cpu-energy | libraries | 2017-01-20 | \- | r217\<br />r211\<br />r117\<br />2017-01-20\<br />2016-04-07 |
-| scorep-cpu-id | libraries | 2014-08-13 | \- | r117 |
-| scorep-dataheap | libraries | 2015-07-28 | \- | *2015-07-28* \<br /> r191\<br />r122 |
-| scorep-dev | tools | 2017-07-19 | \- | *05* |
-| scorep-hdeem | libraries | 2018-06-19 | \- | *2016-12-20* \<br /> sync\<br />2017-12-08a\<br />2017-12-08.lua\<br />2016-11-21 |
-| scorep-plugin-x86-energy | libraries | 2018-06-19 | \- | xmpi\<br />intelmpi\<br />2017-09-06\<br />2017-09-05 |
-| scorep-printmetrics | libraries | 2018-02-26 | \- | 2018-02-26 |
-| scorep-uncore | libraries | 2018-06-21 | \- | *2018-01-24* \<br /> 2016-03-29 |
-| scorep_plugin_x86_energy | libraries | 2018-07-04 | \- | intel-2018\<br />gcc-7.1.0\<br />2017-07-14 |
-| scout | compilers | 2015-06-22 | 1.6.0 | 1.6.0 |
-| sed | tools | 2018-02-21 | \- | 4.4 |
-| sftp | tools | 2014-04-10 | \- | 6.6 |
-| shifter | tools | 2016-06-09 | \- | 16.04.0pre1 |
-| siesta | applications | 2017-05-29 | 3.1-pl20 | 4.0\<br />3.2-pl4 |
-| singularity | tools | 2019-02-13 | | ff69c5f3 |
-| sionlib | tools | 2017-06-29 | \- | 1.6.1\<br />1.5.5 |
-| siox | libraries | 2016-10-27 | \- | 2016-10-27\<br />2016-10-26 |
-| spm | applications | 2014-07-09 | \- | 8-r4667 |
-| spm12 | libraries | 2017-07-12 | \- | r6906 |
-| spparks | applications | 2016-06-30 | \- | 2016feb |
-| sqlite3 | libraries | 2016-07-27 | 3.8.2 | 3.8.10 |
-| sra-tools | tools | 2018-07-19 | \- | 2.9.1 |
-| stack | tools | 2016-06-23 | \- | 1.1.2 |
-| star | applications | 2017-10-25 | \- | *12.06* \<br /> 9.06\<br />12.04\<br />12.02\<br />11.02\<br />10.04 |
-| subread | tools | 2018-07-13 | \- | 1.6.2 |
-| suitesparse | libraries | 2017-08-25 | \- | *4.5.4* \<br /> 4.2.1 |
-| superlu | libraries | 2017-08-25 | \- | *5.2.1* |
-| superlu_dist | libraries | 2017-03-21 | \- | 5.1.3 |
-| superlu_mt | libraries | 2017-03-21 | \- | 3.1 |
-| svn | tools | 2016-03-16 | 1.8.11\<br />1.7.3 | *1.9.3* \<br /> 1.8.8\<br />1.8.11 |
-| swig | tools | 2016-04-08 | 2.0 | 3.0.8\<br />2.0 |
-| swipl | tools | 2017-02-28 | \- | 7.4.0-rc2 |
-| tcl | applications | 2017-08-07 | \- | 8.6.6 |
-| tcltk | applications | 2015-02-06 | \- | 8.4.20 |
-| tecplot360 | applications | 2018-05-22 | 2015\<br />2013 | 2018r1\<br />2017r2\<br />2017r1\<br />2016r2\<br />2015r2\<br />2015\<br />2013\<br />2010 |
-| tesseract | libraries | 2016-06-28 | \- | 3.04 |
-| texinfo | devel | 2020-08-11 | \- | 5.2 |
-| theodore | libraries | 2016-05-27 | \- | 1.3 |
-| tiff | libraries | 2013-09-16 | 3.9.2 | 3.9.2 |
-| tinker | applications | 2014-03-04 | \- | 6.3 |
-| tmux | tools | 2021-04-09 | \- | 2.2 |
-| totalview | tools | 2017-11-03 | *2017.2.11* \<br /> 8.9.2-0\<br />8.8.0-1\<br />8.13.0-0\<br />8.11.0-3 | *2017.2.11* \<br /> 8.9.2-0\<br />8.8.0-1\<br />8.13.0-0\<br />8.11.0-3 |
-| trilinos | applications | 2016-04-13 | \- | 12.6.1 |
-| trinityrnaseq | applications | 2013-05-16 | r2013-02-25 | \- |
-| turbomole | applications | 2017-01-10 | 7.1\<br />6.6\<br />6.5 | 7.1\<br />6.6\<br />6.5 |
-| valgrind | tools | 2017-08-08 | 3.8.1 | *3.10.1* \<br /> r15216\<br />3.8.1\<br />3.13.0 |
-| vampir | tools | 2019-03-04 | *9.6.1* \<br /> 9.7\<br />9.5.0\<br />9.4.0\<br />9.3.0\<br />8.5.0 | *9.5.0* \<br /> 9.4.0\<br />9.3.0\<br />9.3\<br />9.2.0\<br />9.1.0\<br />9.0.0\<br />8.5.0\<br />8.4.1\<br />8.3.0 |
-| vampirlive | tools | 2018-02-27 | \- | |
-| vampirtrace | tools | 2016-03-29 | *5.14.4* | *5.14.4* |
-| vampirtrace-plugins | libraries | 2014-08-06 | \- | x86\<br />power-1.1\<br />power-1.0\<br />apapi |
-| vasp | applications | 2017-11-08 | *5.3* \<br /> 5.2 | 5.4.4\<br />5.4.1\<br />5.3 |
-| visit | applications | 2016-12-13 | \- | 2.4.2\<br />2.12.0 |
-| vmd | applications | 2016-12-15 | \- | 1.9.3 |
-| vt_dataheap | libraries | 2014-08-14 | \- | r190 |
-| vtk | libraries | 2016-08-16 | 5.10.1 | 5.10.1 |
-| wannier90 | libraries | 2016-04-21 | 1.2 | 2.0.1\<br />1.2 |
-| wget | tools | 2015-05-12 | 1.16.3 | 1.16.3 |
-| wxwidgets | libraries | 2017-03-15 | \- | 3.0.2 |
-| yade | applications | 2014-05-22 | \- | |
-| zlib | lib | 2020-12-11 | \- | 1.2.8 |
-
-### ML Environment
-
-<span class="twiki-macro TABLE">headerrows= 1"</span> <span
-class="twiki-macro EDITTABLE"
-format="| text, 30, Software | text, 40, Kategorie | text, 30, Letzte Änderung | text, 30, SGI-UV | text, 30, Taurus | "
-changerows="on"></span>
-
-| Software | Category | Last change | Venus | Taurus |
-|:--------------------------|:----------|:------------|:------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| ASE | chem | 2020-09-29 | \- | 3.19.0 |
-| ATK | vis | 2020-10-12 | \- | 2.34.1\<br />2.28.1 |
-| Anaconda3 | lang | 2019-11-13 | \- | 2019.07\<br />2019.03 |
-| Arrow | data | 2020-11-30 | \- | 0.16.0\<br />0.14.1 |
-| Autoconf | devel | 2020-10-14 | \- | 2.69 |
-| Automake | devel | 2020-10-14 | \- | 1.16.1\<br />1.15.1 |
-| Autotools | devel | 2020-10-14 | \- | 20180311\<br />20170619 |
-| Bazel | devel | 2021-03-22 | \- | 3.7.1\<br />3.4.1\<br />2.0.0\<br />1.1.0\<br />0.29.1\<br />0.26.1\<br />0.25.2\<br />0.20.0\<br />0.18.0 |
-| BigDataFrameworkConfigure | devel | 2019-09-16 | \- | 0.0.2\<br />0.0.1 |
-| Bison | lang | 2020-10-14 | \- | 3.5.3\<br />3.3.2\<br />3.0.5\<br />3.0.4 |
-| Boost | devel | 2020-11-30 | \- | 1.71.0\<br />1.70.0\<br />1.69.0\<br />1.67.0\<br />1.66.0 |
-| CMake | devel | 2020-11-02 | \- | 3.9.5\<br />3.9.1\<br />3.16.4\<br />3.15.3\<br />3.13.3\<br />3.12.1\<br />3.11.4\<br />3.10.2 |
-| CUDA | system | 2020-10-14 | \- | 9.2.88\<br />11.0.2\<br />10.1.243\<br />10.1.105 |
-| CUDAcore | system | 2020-10-14 | \- | 11.0.2 |
-| Check | lib | 2020-10-14 | \- | 0.15.2 |
-| Clang | compiler | 2020-02-20 | \- | 9.0.1 |
-| CubeLib | perf | 2020-07-23 | \- | 4.4.4\<br />4.4 |
-| CubeW | perf | 2019-02-04 | \- | 4.4 |
-| CubeWriter | perf | 2020-07-23 | \- | 4.4.3 |
-| DBus | devel | 2019-09-11 | \- | 1.13.8 |
-| Devel-NYTProf | perf | 2019-08-30 | \- | 6.06 |
-| Doxygen | devel | 2019-07-17 | \- | 1.8.14\<br />1.8.13 |
-| EasyBuild | tools | 2021-03-08 | \- | 4.3.3\<br />4.3.2\<br />4.3.1\<br />4.3.0\<br />4.2.2\<br />4.2.0\<br />4.1.2\<br />4.1.1\<br />4.1.0\<br />4.0.1\<br />3.9.4\<br />3.9.3\<br />3.9.2\<br />3.9.1\<br />3.8.1\<br />3.8.0\<br />3.7.1\<br />3.7.0\<br />3.6.2\<br />3.6.1 |
-| Eigen | math | 2020-11-02 | \- | 3.3.7 |
-| FFTW | numlib | 2020-10-14 | \- | 3.3.8\<br />3.3.7\<br />3.3.6 |
-| FFmpeg | vis | 2020-09-29 | \- | 4.2.1\<br />4.1 |
-| Flink | devel | 2019-09-16 | \- | 1.9.0\<br />1.8.1 |
-| FriBidi | lang | 2020-09-29 | \- | 1.0.5 |
-| GCC | compiler | 2020-10-14 | \- | 9.3.0\<br />8.3.0\<br />8.2.0-2.31.1\<br />7.3.0-2.30\<br />6.4.0-2.28 |
-| GCCcore | compiler | 2020-10-14 | \- | 9.3.0\<br />8.3.0\<br />8.2.0\<br />7.3.0\<br />6.4.0 |
-| GDAL | data | 2019-08-19 | \- | 2.2.3 |
-| GDRCopy | lib | 2020-10-14 | \- | 2.1 |
-| GEOS | math | 2019-08-19 | \- | 3.6.2 |
-| GLib | vis | 2020-02-19 | \- | 2.62.0\<br />2.60.1\<br />2.54.3 |
-| GMP | math | 2020-11-02 | \- | 6.2.0\<br />6.1.2 |
-| GObject-Introspection | devel | 2020-10-12 | \- | 1.63.1\<br />1.54.1 |
-| GSL | numlib | 2020-02-19 | \- | 2.6\<br />2.5 |
-| GTK+ | vis | 2019-02-15 | \- | 2.24.32 |
-| Gdk-Pixbuf | vis | 2019-02-15 | \- | 2.36.12 |
-| Ghostscript | tools | 2020-02-19 | \- | 9.50\<br />9.27 |
-| HDF5 | data | 2020-02-19 | \- | 1.10.5\<br />1.10.2\<br />1.10.1 |
-| Hadoop | devel | 2019-09-16 | \- | 2.7.7 |
-| HarfBuzz | vis | 2019-02-15 | \- | 2.2.0 |
-| Horovod | tools | 2020-08-04 | \- | 0.19.5\<br />0.18.2 |
-| Hyperopt | lib | 2020-02-19 | \- | 0.2.2 |
-| ICU | lib | 2020-02-19 | \- | 64.2\<br />61.1\<br />56.1 |
-| ImageMagick | vis | 2020-02-20 | \- | 7.0.9-5\<br />7.0.8-46 |
-| JUnit | devel | 2020-01-21 | \- | 4.12 |
-| JasPer | vis | 2020-02-19 | \- | 2.0.14 |
-| Java | lang | 2020-02-26 | \- | 11.0.6\<br />1.8.0-162\<br />1.8-191-b26 |
-| JsonCpp | lib | 2020-10-30 | \- | 1.9.3 |
-| Keras | math | 2019-06-28 | \- | 2.2.4 |
-| LAME | data | 2020-06-24 | \- | 3.100 |
-| LLVM | compiler | 2020-09-24 | \- | 9.0.0\<br />8.0.1\<br />7.0.1\<br />6.0.0\<br />5.0.1 |
-| LMDB | lib | 2020-10-30 | \- | 0.9.24 |
-| LibTIFF | lib | 2020-02-19 | \- | 4.0.9\<br />4.0.10 |
-| LibUUID | lib | 2019-08-02 | \- | 1.0.3 |
-| LittleCMS | vis | 2020-02-20 | \- | 2.9 |
-| M4 | devel | 2020-10-14 | \- | 1.4.18\<br />1.4.17 |
-| MPFR | math | 2020-06-24 | \- | 4.0.2 |
-| Mako | devel | 2020-02-19 | \- | 1.1.0\<br />1.0.8\<br />1.0.7 |
-| Mesa | vis | 2020-02-19 | \- | 19.1.7\<br />19.0.1\<br />18.1.1\<br />17.3.6 |
-| Meson | tools | 2020-11-03 | \- | 0.55.1\<br />0.51.2\<br />0.50.0 |
-| MongoDB | data | 2019-08-05 | \- | 4.0.3 |
-| NASM | lang | 2020-02-19 | \- | 2.14.02\<br />2.13.03 |
-| NCCL | lib | 2020-02-18 | \- | 2.4.8\<br />2.4.2\<br />2.3.7 |
-| NLopt | numlib | 2020-02-19 | \- | 2.6.1\<br />2.4.2 |
-| NSPR | lib | 2019-09-11 | \- | 4.21 |
-| NSS | lib | 2019-09-11 | \- | 3.42.1 |
-| Ninja | tools | 2020-11-03 | \- | 1.9.0\<br />1.10.0 |
-| OPARI2 | perf | 2020-07-23 | \- | 2.0.5\<br />2.0.3 |
-| OTF2 | perf | 2020-07-23 | \- | 2.2\<br />2.1.1 |
-| OpenBLAS | numlib | 2020-10-14 | \- | 0.3.9\<br />0.3.7\<br />0.3.5\<br />0.3.1\<br />0.2.20 |
-| OpenCV | vis | 2019-02-21 | \- | 4.0.1 |
-| OpenMPI | mpi | 2021-02-10 | \- | 4.0.3\<br />3.1.4\<br />3.1.3\<br />3.1.1 |
-| OpenPGM | system | 2019-09-11 | \- | 5.2.122 |
-| PAPI | perf | 2020-07-23 | \- | 6.0.0\<br />5.6.0 |
-| PCRE | devel | 2020-02-19 | \- | 8.43\<br />8.41 |
-| PCRE2 | devel | 2019-09-11 | \- | 10.33 |
-| PDT | perf | 2020-07-23 | \- | 3.25 |
-| PGI | compiler | 2019-05-14 | \- | 19.4 |
-| PMIx | lib | 2020-10-14 | \- | 3.1.5 |
-| PROJ | lib | 2019-08-19 | \- | 5.0.0 |
-| Pango | vis | 2019-02-15 | \- | 1.42.4 |
-| Perl | lang | 2020-10-14 | \- | 5.30.2\<br />5.30.0\<br />5.28.1\<br />5.28.0\<br />5.26.1 |
-| Pillow | vis | 2020-06-24 | \- | 6.2.1 |
-| PowerAI | data | 2019-12-10 | \- | 1.7.0.a0\<br />1.6.1 |
-| PyTorch | devel | 2020-09-29 | \- | 1.6.0\<br />1.3.1\<br />1.1.0 |
-| PyTorch-Geometric | devel | 2020-09-29 | \- | 1.6.1 |
-| PyYAML | lib | 2020-02-18 | \- | 5.1.2\<br />3.13 |
-| Python | lang | 2020-11-02 | \- | 3.8.2\<br />3.7.4\<br />3.7.2\<br />3.6.6\<br />3.6.4\<br />2.7.16\<br />2.7.15\<br />2.7.14 |
-| PythonAnaconda | lang | 2019-12-10 | \- | 3.7\<br />3.6 |
-| Qt5 | devel | 2019-09-12 | \- | 5.12.3 |
-| R | lang | 2020-08-20 | \- | 3.6.2\<br />3.6.0\<br />3.4.4 |
-| RDFlib | lib | 2020-09-29 | \- | 4.2.2 |
-| SCons | devel | 2019-09-11 | \- | 3.0.5 |
-| SIONlib | lib | 2020-07-23 | \- | 1.7.6 |
-| SQLite | devel | 2020-11-02 | \- | 3.31.1\<br />3.29.0\<br />3.27.2\<br />3.24.0\<br />3.21.0\<br />3.20.1 |
-| SWIG | devel | 2020-10-30 | \- | 4.0.1\<br />3.0.12 |
-| ScaLAPACK | numlib | 2020-10-14 | \- | 2.1.0\<br />2.0.2 |
-| SciPy-bundle | lang | 2020-11-02 | \- | 2020.03\<br />2019.10 |
-| Score-P | perf | 2020-07-23 | \- | 6.0\<br />4.1 |
-| Six | lib | 2019-02-05 | \- | 1.11.0 |
-| Spark | devel | 2020-09-29 | \- | 3.0.1\<br />2.4.4\<br />2.4.3 |
-| SpectrumMPI | mpi | 2019-01-14 | \- | system |
-| Szip | tools | 2020-02-18 | \- | 2.1.1 |
-| Tcl | lang | 2020-11-02 | \- | 8.6.9\<br />8.6.8\<br />8.6.7\<br />8.6.10 |
-| TensorFlow | lib | 2020-10-30 | \- | 2.3.1\<br />2.2.0\<br />2.1.0\<br />2.0.0\<br />1.15.0\<br />1.14.0 |
-| Tk | vis | 2020-02-19 | \- | 8.6.9\<br />8.6.8 |
-| Tkinter | lang | 2020-09-23 | \- | 3.7.4\<br />3.6.6 |
-| UCX | lib | 2020-10-14 | \- | 1.8.0 |
-| UDUNITS | phys | 2020-02-19 | \- | 2.2.26 |
-| UnZip | tools | 2020-11-02 | \- | 6.0 |
-| Vampir | perf | 2020-11-30 | \- | 9.9.0\<br />9.8.0\<br />9.7.1\<br />9.11\<br />9.10.0 |
-| X11 | vis | 2020-11-03 | \- | 20200222\<br />20190717\<br />20190311\<br />20180604\<br />20180131 |
-| XML-Parser | data | 2019-02-15 | \- | 2.44-01 |
-| XZ | tools | 2020-10-14 | \- | 5.2.5\<br />5.2.4\<br />5.2.3 |
-| Yasm | lang | 2020-09-29 | \- | 1.3.0 |
-| ZeroMQ | devel | 2019-09-11 | \- | 4.3.2 |
-| Zip | tools | 2020-07-30 | \- | 3.0 |
-| ant | devel | 2020-10-12 | \- | 1.10.7\<br />1.10.1 |
-| binutils | tools | 2020-10-14 | \- | 2.34\<br />2.32\<br />2.31.1\<br />2.30\<br />2.28 |
-| bokeh | tools | 2020-09-29 | \- | 1.4.0 |
-| bzip2 | tools | 2020-11-02 | \- | 1.0.8\<br />1.0.6 |
-| cURL | tools | 2020-11-02 | \- | 7.69.1\<br />7.66.0\<br />7.63.0\<br />7.60.0\<br />7.58.0 |
-| cairo | vis | 2020-02-19 | \- | 1.16.0\<br />1.14.12 |
-| cftime | data | 2019-07-17 | \- | 1.0.1 |
-| cuDNN | numlib | 2020-02-18 | \- | 7.6.4.38\<br />7.4.2.24\<br />7.1.4.18 |
-| dask | data | 2020-09-29 | \- | 2.8.0 |
-| dill | data | 2019-10-29 | \- | 0.3.1.1 |
-| double-conversion | lib | 2020-08-13 | \- | 3.1.4 |
-| expat | tools | 2020-10-14 | \- | 2.2.9\<br />2.2.7\<br />2.2.6\<br />2.2.5 |
-| flatbuffers | devel | 2020-10-30 | \- | 1.12.0 |
-| flatbuffers-python | devel | 2021-04-10 | \- | 1.12 |
-| flex | lang | 2020-10-14 | \- | 2.6.4\<br />2.6.3 |
-| fontconfig | vis | 2020-11-03 | \- | 2.13.92\<br />2.13.1\<br />2.13.0\<br />2.12.6 |
-| fosscuda | toolchain | 2020-10-14 | \- | 2020a\<br />2019b\<br />2019a\<br />2018b |
-| freetype | vis | 2020-11-03 | \- | 2.9.1\<br />2.9\<br />2.10.1 |
-| future | lib | 2019-02-05 | \- | 0.16.0 |
-| gcccuda | toolchain | 2020-10-14 | \- | 2020a\<br />2019b\<br />2019a\<br />2018b |
-| gettext | tools | 2020-11-03 | \- | 0.20.1\<br />0.19.8.1 |
-| gflags | devel | 2020-06-24 | \- | 2.2.2 |
-| giflib | lib | 2020-10-30 | \- | 5.2.1 |
-| git | tools | 2020-02-18 | \- | 2.23.0\<br />2.18.0 |
-| glog | devel | 2020-06-24 | \- | 0.4.0 |
-| golf | toolchain | 2019-01-14 | \- | 2018a |
-| gompic | toolchain | 2020-10-14 | \- | 2020a\<br />2019b\<br />2019a\<br />2018b |
-| gperf | devel | 2020-11-03 | \- | 3.1 |
-| gsmpi | toolchain | 2019-01-14 | \- | 2018a |
-| gsolf | toolchain | 2019-01-14 | \- | 2018a |
-| h5py | data | 2020-07-30 | \- | 2.8.0\<br />2.10.0 |
-| help2man | tools | 2020-10-14 | \- | 1.47.8\<br />1.47.6\<br />1.47.4\<br />1.47.12 |
-| hwloc | system | 2020-10-14 | \- | 2.2.0\<br />2.0.3\<br />1.11.12\<br />1.11.11\<br />1.11.10 |
-| hypothesis | tools | 2020-06-24 | \- | 4.44.2 |
-| intltool | devel | 2020-11-03 | \- | 0.51.0 |
-| libGLU | vis | 2020-02-19 | \- | 9.0.1\<br />9.0.0 |
-| libdrm | lib | 2020-02-19 | \- | 2.4.99\<br />2.4.97\<br />2.4.92\<br />2.4.91 |
-| libevent | lib | 2020-10-14 | \- | 2.1.8\<br />2.1.11 |
-| libfabric | lib | 2021-02-10 | \- | 1.11.0 |
-| libffi | lib | 2020-11-02 | \- | 3.3\<br />3.2.1 |
-| libgeotiff | lib | 2019-08-19 | \- | 1.4.2 |
-| libjpeg-turbo | lib | 2020-02-19 | \- | 2.0.3\<br />2.0.2\<br />2.0.0\<br />1.5.3 |
-| libpciaccess | system | 2020-10-14 | \- | 0.16\<br />0.14 |
-| libpng | lib | 2020-11-03 | \- | 1.6.37\<br />1.6.36\<br />1.6.34 |
-| libreadline | lib | 2020-10-14 | \- | 8.0\<br />7.0 |
-| libsndfile | lib | 2020-02-19 | \- | 1.0.28 |
-| libsodium | lib | 2019-09-11 | \- | 1.0.17 |
-| libtool | lib | 2020-10-14 | \- | 2.4.6 |
-| libunwind | lib | 2020-09-25 | \- | 1.3.1\<br />1.2.1 |
-| libxml2 | lib | 2020-10-14 | \- | 2.9.9\<br />2.9.8\<br />2.9.7\<br />2.9.4\<br />2.9.10 |
-| libxslt | lib | 2020-10-27 | \- | 1.1.34\<br />1.1.33\<br />1.1.32 |
-| libyaml | lib | 2020-01-24 | \- | 0.2.2\<br />0.2.1 |
-| magma | math | 2020-09-29 | \- | 2.5.1 |
-| matplotlib | vis | 2020-09-23 | \- | 3.1.1\<br />3.0.3 |
-| ncurses | devel | 2020-10-14 | \- | 6.2\<br />6.1\<br />6.0 |
-| netCDF | data | 2019-07-17 | \- | 4.6.1\<br />4.6.0 |
-| netcdf4-python | data | 2019-07-17 | \- | 1.4.3 |
-| nettle | lib | 2020-02-19 | \- | 3.5.1\<br />3.4.1\<br />3.4 |
-| nsync | devel | 2020-10-30 | \- | 1.24.0 |
-| numactl | tools | 2020-10-14 | \- | 2.0.13\<br />2.0.12\<br />2.0.11 |
-| numba | lang | 2020-09-25 | \- | 0.47.0 |
-| pixman | vis | 2020-02-19 | \- | 0.38.4\<br />0.38.0\<br />0.34.0 |
-| pkg-config | devel | 2020-10-14 | \- | 0.29.2 |
-| pkgconfig | devel | 2020-02-18 | \- | 1.5.1\<br />1.3.1 |
-| pocl | lib | 2020-04-22 | \- | 1.4 |
-| protobuf | devel | 2020-01-24 | \- | 3.6.1.2\<br />3.6.1\<br />3.10.0 |
-| protobuf-python | devel | 2020-10-30 | \- | 3.10.0 |
-| pybind11 | lib | 2020-11-02 | \- | 2.4.3 |
-| re2c | tools | 2019-09-11 | \- | 1.1.1 |
-| rstudio | lang | 2020-01-21 | \- | 1.2.5001 |
-| scikit-image | vis | 2020-09-29 | \- | 0.16.2 |
-| scikit-learn | data | 2020-09-24 | \- | 0.21.3 |
-| snappy | lib | 2020-10-30 | \- | 1.1.7 |
-| spleeter | tools | 2020-10-05 | \- | 1.5.4 |
-| torchvision | vis | 2021-03-11 | \- | 0.7.0 |
-| tqdm | lib | 2020-09-29 | \- | 4.41.1 |
-| typing-extensions | devel | 2021-04-10 | \- | 3.7.4.3 |
-| util-linux | tools | 2020-11-03 | \- | 2.35\<br />2.34\<br />2.33\<br />2.32.1\<br />2.32\<br />2.31.1 |
-| wheel | tools | 2019-01-30 | \- | 0.31.1 |
-| x264 | vis | 2020-06-24 | \- | 20190925\<br />20181203 |
-| x265 | vis | 2020-09-29 | \- | 3.2\<br />3.0 |
-| xorg-macros | devel | 2020-10-14 | \- | 1.19.2 |
-| zlib | lib | 2020-10-14 | \- | 1.2.11 |
-| zsh | tools | 2021-01-06 | \- | 5.8 |
diff --git a/twiki2md/root/PerformanceTools/IOTrack.md b/twiki2md/root/PerformanceTools/IOTrack.md
deleted file mode 100644
index f20334c8ead2ae2fcb75e39a7b1096ec524e0cbc..0000000000000000000000000000000000000000
--- a/twiki2md/root/PerformanceTools/IOTrack.md
+++ /dev/null
@@ -1,27 +0,0 @@
-# Introduction
-
-IOTrack is a small tool developed at ZIH that tracks the I/O requests of
-all processes and dumps a statistic per process at the end of the
-program run.
-
-# How it works
-
-On taurus load the module via
-
- module load iotrack
-
-Then, instead of running your normal command, put "iotrack" in front of
-it. So,
-
- python xyz.py arg1 arg2
-
-changes to:
-
- iotrack python xyz.py arg1 arg2
-
-# Technical Details
-
-The functionality is implemented in a library that is preloaded via
-LD_PRELOAD. Thus, this will not work for static binaries.
-
--- Main.MichaelKluge - 2013-07-16
diff --git a/twiki2md/root/SoftwareDevelopment/PerformanceTools.md b/twiki2md/root/SoftwareDevelopment/PerformanceTools.md
deleted file mode 100644
index eb353e8d62612b27761368ce9d6a6326918e1d2f..0000000000000000000000000000000000000000
--- a/twiki2md/root/SoftwareDevelopment/PerformanceTools.md
+++ /dev/null
@@ -1,15 +0,0 @@
-# Performance Tools
-
-- [Score-P](ScoreP) - tool suite for profiling, event tracing, and
- online analysis of HPC applications
-- [VampirTrace](VampirTrace) - recording performance relevant data at
- runtime
-- [Vampir](Vampir) - visualizing performance data from your program
-- [Hardware performance counters - PAPI](PapiLibrary) - generic
- performance counters
-- [perf tools](PerfTools) - general performance statistic
-- [IOTrack](IOTrack) - I/O statistics
-- [EnergyMeasurement](EnergyMeasurement) - energy/power measurements
- on taurus
-
--- Main.mark - 2009-12-16
diff --git a/twiki2md/root/SystemTaurus/EnergyMeasurement.md b/twiki2md/root/SystemTaurus/EnergyMeasurement.md
deleted file mode 100644
index 607263056fd593b5f0ae62474a1c63961c8b31aa..0000000000000000000000000000000000000000
--- a/twiki2md/root/SystemTaurus/EnergyMeasurement.md
+++ /dev/null
@@ -1,310 +0,0 @@
-# Energy Measurement Infrastructure
-
-All nodes of the HPC machine Taurus are equipped with power
-instrumentation that allow the recording and accounting of power
-dissipation and energy consumption data. The data is made available
-through several different interfaces, which will be described below.
-
-## System Description
-
-The Taurus system is split into two phases. While both phases are
-equipped with energy-instrumented nodes, the instrumentation
-significantly differs in the number of instrumented nodes and their
-spatial and temporal granularity.
-
-### Phase 1
-
-In phase one, the 270 Sandy Bridge nodes are equipped with node-level
-power instrumentation that is stored in the Dataheap infrastructure at a
-rate of 1Sa/s and further the energy consumption of a job is available
-in SLURM (see below).
-
-### Phase 2
-
-In phase two, all of the 1456 Haswell DLC nodes are equipped with power
-instrumentation. In addition to the access methods of phase one, users
-will also be able to access the measurements through a C API to get the
-full temporal and spatial resolution, as outlined below:
-
-- ** Blade:**1 kSa/s for the whole node, includes both sockets, DRAM,
- SSD, and other on-board consumers. Since the system is directly
- water cooled, no cooling components are included in the blade
- consumption.
-- **Voltage regulators (VR):** 100 Sa/s for each of the six VR
- measurement points, one for each socket and four for eight DRAM
- lanes (two lanes bundled).
-
-The GPU blades of each Phase as well as the Phase I Westmere partition
-also have 1 Sa/s power instrumentation but have a lower accuracy.
-
-HDEEM is now generally available on all nodes in the "haswell"
-partition.
-
-## Summary of Measurement Interfaces
-
-| Interface | Sensors | Rate | Phase I | Phase II Haswell |
-|:-------------------------------------------|:----------------|:--------------------------------|:--------|:-----------------|
-| Dataheap (C, Python, VampirTrace, Score-P) | Blade, (CPU) | 1 Sa/s | yes | yes |
-| HDEEM\* (C, Score-P) | Blade, CPU, DDR | 1 kSa/s (Blade), 100 Sa/s (VRs) | no | yes |
-| HDEEM Command Line Interface | Blade, CPU, DDR | 1 kSa/s (Blade), 100 Sa/s (VR) | no | yes |
-| SLURM Accounting (sacct) | Blade | Per Job Energy | yes | yes |
-| SLURM Profiling (hdf5) | Blade | up to 1 Sa/s | yes | yes |
-
-Note: Please specify `-p haswell --exclusive` along with your job
-request if you wish to use hdeem.
-
-## Accuracy
-
-HDEEM measurements have an accuracy of 2 % for Blade (node)
-measurements, and 5 % for voltage regulator (CPU, DDR) measurements.
-
-## Command Line Interface
-
-The HDEEM infrastructure can be controlled through command line tools
-that are made available by loading the **hdeem** module. They are
-commonly used on the node under test to start, stop, and query the
-measurement device.
-
-- **startHdeem**: Start a measurement. After the command succeeds, the
- measurement data with the 1000 / 100 Sa/s described above will be
- recorded on the Board Management Controller (BMC), which is capable
- of storing up to 8h of measurement data.
-- **stopHdeem**: Stop a measurement. No further data is recorded and
- the previously recorded data remains available on the BMC.
-- **printHdeem**: Read the data from the BMC. By default, the data is
- written into a CSV file, whose name can be controlled using the
- **-o** argument.
-- **checkHdeem**: Print the status of the measurement device.
-- **clearHdeem**: Reset and clear the measurement device. No further
- data can be read from the device after this command is executed
- before a new measurement is started.
-
-## Integration in Application Performance Traces
-
-The per-node power consumption data can be included as metrics in
-application traces by using the provided metric plugins for Score-P (and
-VampirTrace). The plugins are provided as modules and set all necessary
-environment variables that are required to record data for all nodes
-that are part of the current job.
-
-For 1 Sa/s Blade values (Dataheap):
-
-- [Score-P](ScoreP): use the module **`scorep-dataheap`**
-- [VampirTrace](VampirTrace): use the module
- **vampirtrace-plugins/power-1.1**
-
-For 1000 Sa/s (Blade) and 100 Sa/s (CPU{0,1}, DDR{AB,CD,EF,GH}):
-
-- [Score-P](ScoreP): use the module **\<span
- class="WYSIWYG_TT">scorep-hdeem\</span>**\<br />Note: %ENDCOLOR%This
- module requires a recent version of "scorep/sync-...". Please use
- the latest that fits your compiler & MPI version.**\<br />**
-- [VampirTrace](VampirTrace): not supported
-
-By default, the modules are set up to record the power data for the
-nodes they are used on. For further information on how to change this
-behavior, please use module show on the respective module.
-
- # Example usage with gcc
- % module load scorep/trunk-2016-03-17-gcc-xmpi-cuda7.5
- % module load scorep-dataheap
- % scorep gcc application.c -o application
- % srun ./application
-
-Once the application is finished, a trace will be available that allows
-you to correlate application functions with the component power
-consumption of the parallel application. Note: For energy measurements,
-only tracing is supported in Score-P/VampirTrace. The modules therefore
-disables profiling and enables tracing, please use [Vampir](Vampir) to
-view the trace.
-
-\<img alt="demoHdeem_high_low_vampir_3.png" height="262"
-src="%ATTACHURL%/demoHdeem_high_low_vampir_3.png" width="695" />
-
-%RED%Note<span class="twiki-macro ENDCOLOR"></span>: the power
-measurement modules **`scorep-dataheap`** and **`scorep-hdeem`** are
-dynamic and only need to be loaded during execution. However,
-**`scorep-hdeem`** does require the application to be linked with a
-certain version of Score-P.
-
-By default,** `scorep-dataheap`**records all sensors that are available.
-Currently this is the total node consumption and for Phase II the CPUs.
-**`scorep-hdeem`** also records all available sensors (node, 2x CPU, 4x
-DDR) by default. You can change the selected sensors by setting the
-environment variables:
-
- # For HDEEM
- % export SCOREP_METRIC_HDEEM_PLUGIN=Blade,CPU*
- # For Dataheap
- % export SCOREP_METRIC_DATAHEAP_PLUGIN=localhost/watts
-
-For more information on how to use Score-P, please refer to the
-[respective documentation](ScoreP).
-
-## Access Using Slurm Tools
-
-[Slurm](Slurm) maintains its own database of job information, including
-energy data. There are two main ways of accessing this data, which are
-described below.
-
-### Post-Mortem Per-Job Accounting
-
-This is the easiest way of accessing information about the energy
-consumed by a job and its job steps. The Slurm tool `sacct` allows users
-to query post-mortem energy data for any past job or job step by adding
-the field `ConsumedEnergy` to the `--format` parameter:
-
- $> sacct --format="jobid,jobname,ntasks,submit,start,end,ConsumedEnergy,nodelist,state" -j 3967027
- JobID JobName NTasks Submit Start End ConsumedEnergy NodeList State
- ------------ ---------- -------- ------------------- ------------------- ------------------- -------------- --------------- ----------
- 3967027 bash 2014-01-07T12:25:42 2014-01-07T12:25:52 2014-01-07T12:41:20 taurusi1159 COMPLETED
- 3967027.0 sleep 1 2014-01-07T12:26:07 2014-01-07T12:26:07 2014-01-07T12:26:18 0 taurusi1159 COMPLETED
- 3967027.1 sleep 1 2014-01-07T12:29:06 2014-01-07T12:29:06 2014-01-07T12:29:16 1.67K taurusi1159 COMPLETED
- 3967027.2 sleep 1 2014-01-07T12:33:25 2014-01-07T12:33:25 2014-01-07T12:33:36 1.84K taurusi1159 COMPLETED
- 3967027.3 sleep 1 2014-01-07T12:34:06 2014-01-07T12:34:06 2014-01-07T12:34:11 1.09K taurusi1159 COMPLETED
- 3967027.4 sleep 1 2014-01-07T12:38:03 2014-01-07T12:38:03 2014-01-07T12:39:44 18.93K taurusi1159 COMPLETED
-
-The job consisted of 5 job steps, each executing a sleep of a different
-length. Note that the ConsumedEnergy metric is only applicable to
-exclusive jobs.
-
-###
-
-### Slurm Energy Profiling
-
-The `srun` tool offers several options for profiling job steps by adding
-the `--profile` parameter. Possible profiling options are `All`,
-`Energy`, `Task`, `Lustre`, and `Network`. In all cases, the profiling
-information is stored in an hdf5 file that can be inspected using
-available hdf5 tools, e.g., `h5dump`. The files are stored under
-`/scratch/profiling/` for each job, job step, and node. A description of
-the data fields in the file can be found
-[here](http://slurm.schedmd.com/hdf5_profile_user_guide.html#HDF5). In
-general, the data files contain samples of the current **power**
-consumption on a per-second basis:
-
- $> srun -p sandy --acctg-freq=2,energy=1 --profile=energy sleep 10
- srun: job 3967674 queued and waiting for resources
- srun: job 3967674 has been allocated resources
- $> h5dump /scratch/profiling/jschuch/3967674_0_taurusi1073.h5
- [...]
- DATASET "Energy_0000000002 Data" {
- DATATYPE H5T_COMPOUND {
- H5T_STRING {
- STRSIZE 24;
- STRPAD H5T_STR_NULLTERM;
- CSET H5T_CSET_ASCII;
- CTYPE H5T_C_S1;
- } "Date_Time";
- H5T_STD_U64LE "Time";
- H5T_STD_U64LE "Power";
- H5T_STD_U64LE "CPU_Frequency";
- }
- DATASPACE SIMPLE { ( 1 ) / ( 1 ) }
- DATA {
- (0): {
- "",
- 1389097545, # timestamp
- 174, # power value
- 1
- }
- }
- }
-
-##
-
-## Using the HDEEM C API
-
-Note: Please specify -p haswell --exclusive along with your job request
-if you wish to use hdeem.
-
-Please download the offical documentation at \<font face="Calibri"
-size="2"> [\<font
-color="#0563C1">\<u>http://www.bull.com/download-hdeem-library-reference-guide\</u>\</font>](http://www.bull.com/download-hdeem-library-reference-guide)\</font>
-
-The HDEEM headers and sample code are made available via the hdeem
-module. To find the location of the hdeem installation use
-
- % module show hdeem
- -------------------------------------------------------------------
- /sw/modules/taurus/libraries/hdeem/2.1.9ms:
-
- conflict hdeem
- module-whatis Load hdeem version 2.1.9ms
- prepend-path PATH /sw/taurus/libraries/hdeem/2.1.9ms/include
- setenv HDEEM_ROOT /sw/taurus/libraries/hdeem/2.1.9ms
- -------------------------------------------------------------------
-
-You can find an example of how to use the API under
-\<span>$HDEEM_ROOT/sample.\</span>
-
-## Access Using the Dataheap Infrastructure
-
-In addition to the energy accounting data that is stored by Slurm, this
-information is also written into our local data storage and analysis
-infrastructure called
-[Dataheap](http://tu-dresden.de/die_tu_dresden/zentrale_einrichtungen/zih/forschung/projekte/dataheap/).
-From there, the data can be used in various ways, such as including it
-into application performance trace data or querying through a Python
-interface.
-
-The Dataheap infrastructure is designed to store various types of
-time-based samples from different data sources. In the case of the
-energy measurements on Taurus, the data is stored as a timeline of power
-values which allows the reconstruction of the power and energy
-consumption over time. The timestamps are stored as UNIX timestamps with
-a millisecond granularity. The data is stored for each node in the form
-of `nodename/watts`, e.g., `taurusi1073/watts`. Further metrics might
-already be available or might be added in the future for which
-information is available upon request.
-
-**Note**: The dataheap infrastructure can only be accessed from inside
-the university campus network.
-
-### Using the Python Interface
-
-The module `dataheap/1.0` provides a Python module that can be used to
-query the data in the Dataheap for personalized data analysis. The
-following is an example of how to use the interface:
-
- import time
- import os
- from dhRequest import dhClient
-
- # Connect to the dataheap manager
- dhc = dhClient()
- dhc.connect(os.environ['DATAHEAP_MANAGER_ADDR'], int(os.environ['DATAHEAP_MANAGER_PORT']))
-
- # take timestamps
- tbegin = dhc.getTimeStamp()
- # workload
- os.system("srun -n 6 a.out")
- tend = dhc.getTimeStamp()
-
- # wait for the data to get to the
- # dataheap
- time.sleep(5)
-
- # replace this with name of the node the job ran on
- # Note: use multiple requests if the job used multiple nodes
- countername = "taurusi1159/watts"
-
- # query the dataheap
- integral = dhc.storageRequest("INTEGRAL(%d,%d,\"%s\", 0)"%(tbegin, tend, countername))
- # Remember: timestamps are stored in millisecond UNIX timestamps
- energy = integral/1000
-
- print energy
-
- timeline = dhc.storageRequest("TIMELINE(%d,%d,\"%s\", 0)"%(tbegin, tend, countername))
-
- # output a list of all timestamp/power-value pairs
- print timeline
-
-## More information and Citing
-
-More information can be found in the paper \<a
-href="<http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7016382>"
-title="HDEEM Paper E2SC 2014">HDEEM: high definition energy efficiency
-monitoring\</a> by Hackenberg et al. Please cite this paper if you are
-using HDEEM for your scientific work.
diff --git a/twiki2md/root/SystemTaurus/RunningNxGpuAppsInOneJob.md b/twiki2md/root/SystemTaurus/RunningNxGpuAppsInOneJob.md
deleted file mode 100644
index 2152522aeaa03d97841a8a9ca1d5ed844a1a0449..0000000000000000000000000000000000000000
--- a/twiki2md/root/SystemTaurus/RunningNxGpuAppsInOneJob.md
+++ /dev/null
@@ -1,85 +0,0 @@
-# Running Multiple GPU Applications Simultaneously in a Batch Job
-
-Keywords: slurm, job, gpu, multiple, instances, application, program,
-background, parallel, serial, concurrently, simultaneously
-
-## Objective
-
-Our starting point is a (serial) program that needs a single GPU and
-four CPU cores to perform its task (e.g. TensorFlow). The following
-batch script shows how to run such a job on the Taurus partition called
-"ml".
-
- #!/bin/bash
- #SBATCH --ntasks=1
- #SBATCH --cpus-per-task=4
- #SBATCH --gres=gpu:1
- #SBATCH --gpus-per-task=1
- #SBATCH --time=01:00:00
- #SBATCH --mem-per-cpu=1443
- #SBATCH --partition=ml
-
- srun some-gpu-application
-
-When srun is used within a submission script, it inherits parameters
-from sbatch, including --ntasks=1, --cpus-per-task=4, etc. So we
-actually implicitly run the following
-
- srun --ntasks=1 --cpus-per-task=4 ... --partition=ml some-gpu-application
-
-Now, our goal is to run four instances of this program concurrently in a
-**single** batch script. Of course we could also start the above script
-multiple times with sbatch, but this is not what we want to do here.
-
-## Solution
-
-In order to run multiple programs concurrently in a single batch
-script/allocation we have to do three things:
-
-1\. Allocate enough resources to accommodate multiple instances of our
-program. This can be achieved with an appropriate batch script header
-(see below).
-
-2\. Start job steps with srun as background processes. This is achieved
-by adding an ampersand at the end of the srun command
-
-3\. Make sure that each background process gets its private resources.
-We need to set the resource fraction needed for a single run in the
-corresponding srun command. The total aggregated resources of all job
-steps must fit in the allocation specified in the batch script header.
-Additionally, the option --exclusive is needed to make sure that each
-job step is provided with its private set of CPU and GPU resources.
-
-The following example shows how four independent instances of the same
-program can be run concurrently from a single batch script. Each
-instance (task) is equipped with 4 CPUs (cores) and one GPU.
-
- #!/bin/bash
- #SBATCH --ntasks=4
- #SBATCH --cpus-per-task=4
- #SBATCH --gres=gpu:4
- #SBATCH --gpus-per-task=1
- #SBATCH --time=01:00:00
- #SBATCH --mem-per-cpu=1443
- #SBATCH --partition=ml
-
- srun --exclusive --gres=gpu:1 --ntasks=1 --cpus-per-task=4 --gpus-per-task=1 --mem-per-cpu=1443 some-gpu-application &
- srun --exclusive --gres=gpu:1 --ntasks=1 --cpus-per-task=4 --gpus-per-task=1 --mem-per-cpu=1443 some-gpu-application &
- srun --exclusive --gres=gpu:1 --ntasks=1 --cpus-per-task=4 --gpus-per-task=1 --mem-per-cpu=1443 some-gpu-application &
- srun --exclusive --gres=gpu:1 --ntasks=1 --cpus-per-task=4 --gpus-per-task=1 --mem-per-cpu=1443 some-gpu-application &
-
- echo "Waiting for all job steps to complete..."
- wait
- echo "All jobs completed!"
-
-In practice it is possible to leave out resource options in srun that do
-not differ from the ones inherited from the surrounding sbatch context.
-The following line would be sufficient to do the job in this example:
-
- srun --exclusive --gres=gpu:1 --ntasks=1 some-gpu-application &
-
-Yet, it adds some extra safety to leave them in, enabling the SLURM
-scheduler to complain if not enough resources in total were specified in
-the header of the batch script.
-
--- Main.HolgerBrunst - 2021-04-16
diff --git a/twiki2md/root/WebHome/Accessibility.md b/twiki2md/root/WebHome/Accessibility.md
deleted file mode 100644
index 022418cf2d58baf9e223c90117e744752bcc762e..0000000000000000000000000000000000000000
--- a/twiki2md/root/WebHome/Accessibility.md
+++ /dev/null
@@ -1,54 +0,0 @@
-# Erklrung zur Barrierefreiheit
-
-Diese Erklrung zur Barrierefreiheit gilt fr die unter
-<https://doc.zih.tu-dresden.de> verffentlichte Website der Technischen
-Universitt Dresden.
-
-Als ffentliche Stelle im Sinne des Barrierefreie-Websites-Gesetz
-(BfWebG) ist die Technische Universitt Dresden bemht, ihre Websites und
-mobilen Anwendungen im Einklang mit den Bestimmungen des
-Barrierefreie-Websites-Gesetz (BfWebG) in Verbindung mit der
-Barrierefreie-Informationstechnik-Verordnung (BITV 2.0) barrierefrei
-zugnglich zu machen.
-
-## Erstellung dieser Erklrung zur Barrierefreiheit
-
-Diese Erklrung wurde am 17.09.2020 erstellt und zuletzt am 17.09.2020
-aktualisiert. Grundlage der Erstellung dieser Erklrung zur
-Barrierefreiheit ist eine am 17.09.2020 von der TU Dresden durchgefhrte
-Selbstbewertung.
-
-## Stand der Barrierefreiheit
-
-Es wurde bisher noch kein BITV-Test fr die Website durchgefhrt. Dieser
-ist bis 30.11.2020 geplant.
-
-## Kontakt
-
-Sollten Ihnen Mngel in Bezug auf die barrierefreie Gestaltung auffallen,
-knnen Sie uns diese ber das Formular [Barriere
-melden](https://tu-dresden.de/barrierefreiheit/barriere-melden)
-mitteilen und im zugnglichen Format anfordern. Alternativ knnen Sie sich
-direkt an die Meldestelle fr Barrieren wenden (Koordinatorin: Mandy
-Weickert, E-Mail: <barrieren@tu-dresden.de>, Telefon: [+49 351
-463-42022](tel:+49-351-463-42022), Fax: [+49 351
-463-42021](tel:+49-351-463-42021), Besucheradresse: Nthnitzer Strae 46,
-APB 1102, 01187 Dresden).
-
-## Durchsetzungsverfahren
-
-Wenn wir Ihre Rckmeldungen aus Ihrer Sicht nicht befriedigend
-bearbeiten, knnen Sie sich an die Schsische Durchsetzungsstelle wenden:
-
-**Beauftragter der Schsischen Staatsregierung fr die Belange von
-Menschen mit Behinderungen**\<br /> Albertstrae 10\<br /> 01097 Dresden
-
-Postanschrift: Archivstrae 1, 01097 Dresden\<br /> E-Mail:
-<info.behindertenbeauftragter@sk.sachsen.de>\<br /> Telefon: [+49 351
-564-12161](tel:+49-351-564-12161)\<br /> Fax: [+49 351
-564-12169](tel:+49-351-564-12169)\<br /> Webseite:
-<https://www.inklusion.sachsen.de>
-
-\<div id="footer"> \</div>
-
--- Main.MatthiasKraeusslein - 2020-09-18
diff --git a/twiki2md/root/WebHome/FurtherDocumentation.md b/twiki2md/root/WebHome/FurtherDocumentation.md
deleted file mode 100644
index 2e6586a43633c20327fae0132b90d3fe73c1bb7c..0000000000000000000000000000000000000000
--- a/twiki2md/root/WebHome/FurtherDocumentation.md
+++ /dev/null
@@ -1,81 +0,0 @@
-# Further Documentation
-
-
-
-## Libraries and Compiler
-
-- <http://www.intel.com/software/products/mkl/index.htm>
-- <http://www.intel.com/software/products/ipp/index.htm>
-- <http://www.ball-project.org/>
-- <http://www.intel.com/software/products/compilers/> - Intel Compiler
- Suite
-- <http://www.pgroup.com/doc> - PGI Compiler
-- <http://pathscale.com/ekopath.html> - PathScale Compilers
-
-## Tools
-
-- <http://www.allinea.com/downloads/userguide.pdf> - Allinea DDT
- Manual
-- <http://www.totalviewtech.com/support/documentation.html> -
- Totalview Documentation
-- <http://www.gnu.org/software/gdb/documentation/> - GNU Debugger
-- <http://vampir-ng.de> - official homepage of Vampir, an outstanding
- tool for performance analysis developed at ZIH.
-- <http://www.fz-juelich.de/zam/kojak/> - homepage of KOJAK at the FZ
- Jlich. Parts of this project are used by Vampirtrace.
-- <http://www.intel.com/software/products/threading/index.htm>
-
-## OpenMP
-
-You will find a lot of information at the following web pages:
-
-- <http://www.openmp.org>
-- <http://www.compunity.org>
-
-## MPI
-
-The following sites may be interesting:
-
-- <http://www.mcs.anl.gov/mpi/> - the MPI homepage.
-- <http://www.mpi-forum.org/> - Message Passing Interface (MPI) Forum
- Home Page
-- <http://www.open-mpi.org/> - the dawn of a new standard for a more
- fail-tolerant MPI.
-- The manual for SGI-MPI (installed on Mars ) can be found at:
-
-<http://techpubs.sgi.com/library/manuals/3000/007-3773-003/pdf/007-3773-003.pdf>
-
-## SGI developer forum
-
-The web sites behind
-<http://www.sgi.com/developers/resources/tech_pubs.html> are full of
-most detailed information on SGI systems. Have a look onto the section
-'Linux Publications'. You will be redirected to the public part of SGI's
-technical publication repository.
-
-- Linux Application Tuning Guide
-- Linux Programmer's Guide, The
-- Linux Device Driver Programmer's Guide
-- Linux Kernel Internals.... and more.
-
-## Intel Itanium
-
-There is a lot of additional material regarding the Itanium CPU:
-
-- <http://www.intel.com/design/itanium/manuals/iiasdmanual.htm>
-- <http://www.intel.com/design/archives/processors/itanium/index.htm>
-- <http://www.intel.com/design/itanium2/documentation.htm>
-
-You will find the following manuals:
-
-- Intel Itanium Processor Floating-Point Software Assistance handler
- (FPSWA)
-- Intel Itanium Architecture Software Developer's Manuals Volume 1:
- Application Architecture
-- Intel Itanium Architecture Software Developer's Manuals Volume 2:
- System Architecture
-- Intel Itanium Architecture Software Developer's Manuals Volume 3:
- Instruction Set
-- Intel Itanium 2 Processor Reference Manual for Software Development
- and Optimization
-- Itanium Architecture Assembly Language Reference Guide
diff --git a/twiki2md/root/WebHome/TypicalProjectSchedule.md b/twiki2md/root/WebHome/TypicalProjectSchedule.md
deleted file mode 100644
index c7b404ea81e20010d505392e1a67caec71f8b678..0000000000000000000000000000000000000000
--- a/twiki2md/root/WebHome/TypicalProjectSchedule.md
+++ /dev/null
@@ -1,546 +0,0 @@
-# Typical project schedule
-
-
-
-## \<span style="font-size: 1em;">0. Application for HPC login\</span>
-
-In order to use the HPC systems installed at ZIH, a project application
-form has to be filled in. The HPC project manager should hold a
-professorship (university) or head a research group. You may also apply
-for the "Schnupperaccount" (trial account) for one year. Check the
-[Access](Access) page for details.
-
-## \<span style="font-size: 1em;">1. Request for resources\</span>
-
-Important note: Taurus is based on the Linux system. Thus for the
-effective work, you should have to know how to work with
-[Linux](https://en.wikipedia.org/wiki/Linux) based systems and [Linux
-Shell](https://ubuntu.com/tutorials/command-line-for-beginners#1-overview).
-Beginners can find a lot of different tutorials on the internet, [for
-example](https://swcarpentry.github.io/shell-novice/).
-
-### \<span style="font-size: 1em;">1.1 How do I determine the required CPU / GPU hours?\</span>
-
-Taurus is focused on data-intensive computing. The cluster is oriented
-on the work with the high parallel code. Please keep it in mind for the
-transfer sequential code from a local machine. So far you will have
-execution time for the sequential program it is reasonable to use
-[Amdahl's law](https://en.wikipedia.org/wiki/Amdahl%27s_law) to roughly
-predict execution time in parallel. Think in advance about the
-parallelization strategy for your project.
-
-### \<span style="font-size: 1em;">1.2 What software do I need? What is already available (in the correct version)?\</span>
-
-The good practice for the HPC clusters is use software and packages
-where parallelization is possible. The open-source software is more
-preferable than proprietary. However, the majority of popular
-programming languages, scientific applications, software, packages
-available or could be installed on Taurus in different ways. First of
-all, check the [Software module list](SoftwareModulesList). There are
-two different software environments: **scs5** (the regular one) and
-**ml** (environment for the Machine Learning partition). Keep in mind
-that Taurus has a Linux based operating system.
-
-## 2. Access to the cluster
-
-### SSH access
-
-%RED%Important note:%ENDCOLOR%\<span style="font-size: 1em;"> ssh to
-Taurus is only possible from \</span> **inside** \<span
-style="font-size: 1em;"> TU Dresden Campus. Users from outside should
-use \</span> **VPN** \<span style="font-size: 1em;"> (see \</span>\<a
-href="<https://tu-dresden.de/zih/dienste/service-katalog/arbeitsumgebung/zugang_datennetz/vpn>"
-target="\_top">here\</a>\<span style="font-size: 1em;">).\</span>
-
-The recommended way to connect to the HPC login servers directly via
-ssh:
-
- ssh <zih-login>@taurus.hrsk.tu-dresden.de
-
-Please put this command in the terminal and replace \<zih-login> with
-your login that you received during the access procedure. Accept the
-host verifying and enter your password. You will be loaded by login
-nodes in your Taurus home directory.
-
-This method requires two conditions: Linux OS, workstation within the
-campus network. For other options and details check the \<a href="Login"
-target="\_blank">Login page\</a>.
-
-Useful links: [Access](Access), [Project Request
-Form](ProjectRequestForm), [Terms Of Use](TermsOfUse)
-
-## 3. Available software, use of the software
-
-According to 1.2, first of all, check the [Software module
-list](SoftwareModulesList). Keep in mind that there are two different
-environments: **scs5** (for the x86 architecture) and **ml**
-(environment for the Machine Learning partition based on the Power9
-architecture).
-
-\<span style="font-size: 1em;">Work with the software on Taurus could be
-started only after allocating the resources by \</span> [batch
-systems](BatchSystems)\<span style="font-size: 1em;">. By default, you
-are in the login nodes. They are not specified for the work, only for
-the login. Allocating resources will be done by batch system \</span>
-[SLURM](Slurm).
-
-There are a lot of different possibilities to work with software on
-Taurus:
-
-**a.** **Modules**
-
-\<span style="font-size: 1em;">The easiest way to start working with
-software is using the \</span>\<a
-href="RuntimeEnvironment#Module_Environments" target="\_blank">Modules
-system\</a>\<span style="font-size: 1em;">. Modules are a way to use
-frameworks, compilers, loader, libraries, and utilities. The module is a
-user interface that provides utilities for the dynamic modification of a
-user's module environment without manual modifications. You could use
-them for **srun**, bath jobs (**sbatch**) and the Jupyterhub.\</span>
-
-**b. JupyterNotebook**
-
-The Jupyter Notebook is an open-source web application that allows
-creating documents containing live code, equations, visualizations, and
-narrative text. \<span style="font-size: 1em;">There is \</span>\<a
-href="JupyterHub" target="\_self">jupyterhub\</a>\<span
-style="font-size: 1em;"> on Taurus, where you can simply run your
-Jupyter notebook on HPC nodes using modules, preloaded or custom virtual
-environments. Moreover, you can run a [manually created remote jupyter
-server](DeepLearning#Jupyter_notebook) for more specific cases.\</span>
-
-**c.** **Containers**
-
-\<span style="font-size: 1em;">Some tasks require using containers. It
-can be done on Taurus by [Singularity](https://sylabs.io/). Details
-could be found in the [following
-chapter](TypicalProjectSchedule#Use_of_containers).\</span>
-
-Useful links: [Libraries](Libraries), [Deep Learning](DeepLearning),
-[Jupyter Hub](JupyterHub), [Big Data
-Frameworks](BigDataFrameworks:ApacheSparkApacheFlinkApacheHadoop),
-[R](DataAnalyticsWithR), [Applications for various fields of
-science](Applications)
-
-## 4. Create a project structure. Data management
-
-Correct organisation of the project structure is a straightforward way
-to the efficient work of the whole team. There have to be rules and
-regulations for working with the project that every member should
-follow. \<span style="font-size: 1em;">The uniformity of the project
-could be achieved by using for each member of a team: the same **data
-storage** or set of them, the same **set of software** (packages,
-libraries etc), **access rights** to project data should be taken into
-account and set up correctly. \</span>
-
-### 4.1 Data storage and management
-
-#### 4.1.1 Taxonomy of file systems
-
-\<span style="font-size: 1em;">As soon as you have access to Taurus you
-have to manage your data. The main [concept](HPCStorageConcept2019) of
-working with data on Taurus is using [Workspaces](WorkSpaces). Use it
-properly:\</span>
-
-- use a `/home` directory for the limited amount of personal data,
- simple examples and the results of calculations. The home directory
- is not a working directory! However, \<span
- class="WYSIWYG_TT">/home\</span> file system is backed up using
- snapshots;
-- use **workspace** as a place for working data (i.e. datasets);
- Recommendations of choosing the correct storage system for workspace
- presented below.
-
-**Recommendations to choose of storage system:**\<span
-style`"font-size: 1em;">For data that seldomly changes but consumes a lot of space, the </span> ==warm_archive=`
-\<span style="font-size: 1em;"> can be used. (Note that this is
-\</span>mounted** read-only**\<span style="font-size: 1em;">on the
-compute nodes). For a series of calculations that works on the same data
-please use a \</span> **scratch**\<span style="font-size: 1em;">based
-workspace. \</span> **SSD** \<span style="font-size: 1em;">, in its
-turn, is the fastest available file system made only for large parallel
-applications running with millions of small I/O (input, output
-operations).\</span>\<span style="font-size: 1em;"> If the batch job
-needs a directory for temporary data then
-\</span>**\<span>SSD\</span>**\<span style="font-size: 1em;"> is a good
-choice as well. The data can be deleted afterwards.\</span>
-
-Note: Keep in mind that every working space has a storage duration (
-i.e. ssd - 30 days). Thus be careful with the expire date otherwise it
-could vanish. The core data of your project should be [backed
-up](FileSystems#Backup_and_snapshots_of_the_file_system) and
-[archived](PreservationResearchData)(for the most
-[important](https://www.dcc.ac.uk/guidance/how-guides/five-steps-decide-what-data-keep)
-data).
-
-#### \<span style="font-size: 1em;">4.1.2 Backup \</span>
-
-\<span
-style`"font-size: 1em;">The backup is a crucial part of any project. Organize it at the beginning of the project. If you will lose/delete your data in the "no back up" file systems it can not be restored! The b</span><span style="font-size: 13px;">ackup on Taurus is </span><b style="font-size: 1em;">only </b><span style="font-size: 13px;">available in the </span> =/home`
-\<span style`"font-size: 13px;"> and the </span> =/projects` \<span
-style="font-size: 13px;"> file systems! Backed up files could be
-restored by the user. Details could be found
-[here](FileSystems#Backup_and_snapshots_of_the_file_system).\</span>
-
-#### 4.1.3 Folder structure and organizing data
-
-\<span style="font-size: 1em;">Organizing of living data using the file
-system helps for consistency and structuredness of the project.
-\</span>\<span style="font-size: 1em;">We recommend following the rules
-for your work regarding:\</span>
-
-- Organizing the data: Never change the original data; Automatize the
- organizing the data; Clearly separate intermediate and final output
- in the filenames; Carry identifier and original name along in your
- analysis pipeline; Make outputs clearly identifiable; Document your
- analysis steps.
-- Naming Data: Keep s\<span style="font-size: 1em;">hort, but
- meaningful names; \</span>\<span style="font-size: 1em;">Keep
- standard file endings; File names dont replace documentation and
- metadata; Use standards of your discipline; \</span>\<span
- style="font-size: 1em;">Make rules for your project, document and
- keep them (See the \</span> [README
- recommendations](TypicalProjectSchedule#README_recommendation)
- below)
-
-\<span style="font-size: 1em;">This is the example of an organisation
-(hierarchical) for the folder structure. Use it as a visual illustration
-of the above:\</span>
-
-\<img align="justify" alt="Organizing_Data-using_file_systems.png"
-height="161" src="%ATTACHURL%/Organizing_Data-using_file_systems.png"
-title="Organizing_Data-using_file_systems.png" width="300" />
-
-Keep in mind [input-process-output
-pattern](https://en.wikipedia.org/wiki/IPO_model#Programming) for the
-work with folder structure.
-
-#### 4.1.4 README recommendation
-
-In general, [README](https://en.wikipedia.org/wiki/README) is just
-simple general information of software/project that exists in the same
-directory/repository of the project. README is used to explain the
-details project and the **structure** of the project/folder in a short
-way. We recommend using readme as for entire project as for every
-important folder in the project.
-
-Example of the structure for the README:\<br />\<span style="font-size:
-1em;">Think first: What is calculated why? (Description); \</span>\<span
-style="font-size: 1em;">What is expected? (software and version)\<br
-/>\</span>\<span style="font-size: 1em;">Example text file\<br
-/>\</span>\<span style="font-size: 1em;"> Title:\<br />\</span>\<span
-style="font-size: 1em;"> User:\<br />\</span>\<span style="font-size:
-1em;"> Date:\<br />\</span>\<span style="font-size: 1em;">
-Description:\<br />\</span>\<span style="font-size: 1em;"> software:\<br
-/>\</span>\<span style="font-size: 1em;"> version:\</span>
-
-#### 4.1.5 Metadata
-
-Another important aspect is the
-[Metadata](http://dublincore.org/resources/metadata-basics/). It is
-sufficient to use
-[Metadata](PreservationResearchData#Why_should_I_add_Meta_45Data_to_my_data_63)
-for your project on Taurus. [Metadata
-standards](https://en.wikipedia.org/wiki/Metadata_standard) will help to
-do it easier (i.e. [Dublin core](https://dublincore.org/),
-[OME](https://www.openmicroscopy.org/))
-
-#### 4.1.6 Data hygiene
-
-Don't forget about data hygiene: Classify your current data into
-critical (need it now), necessary (need it later) or unnecessary
-(redundant, trivial or obsolete); Track and classify data throughout its
-lifecycle (from creation, storage and use to sharing, archiving and
-destruction); Erase the data you dont need throughout its lifecycle.
-
-### \<span style="font-size: 1em;">4.2 Software packages\</span>
-
-As was written before the module concept is the basic concept for using
-software on Taurus. Uniformity of the project has to be achieved by
-using the same set of software on different levels. It could be done by
-using environments. There are two types of environments should be
-distinguished: runtime environment (the project level, use scripts to
-load [modules](RuntimeEnvironment)), Python virtual environment. The
-concept of the environment will give an opportunity to use the same
-version of the software on every level of the project for every project
-member.
-
-#### Private individual and project modules files
-
-[Private individual and project module
-files](RuntimeEnvironment#Private_Project_Module_Files)\<span
-style="font-size: 1em;"> will be discussed in [chapter
-](TypicalProjectSchedule#A_7._Use_of_specific_software_40packages_44_libraries_44_etc_41)\</span>
-[7](TypicalProjectSchedule#A_7._Use_of_specific_software_40packages_44_libraries_44_etc_41)\<span
-style="font-size: 1em;">. Project modules list is a powerful instrument
-for effective teamwork.\</span>
-
-#### Python virtual environment
-
-If you are working with the Python then it is crucial to use the virtual
-environment on Taurus. The main purpose of Python virtual environments
-(don't mess with the software environment for modules) is to create an
-isolated environment for Python projects (self-contained directory tree
-that contains a Python installation for a particular version of Python,
-plus a number of additional packages).
-
-**Vitualenv (venv)** is a standard Python tool to create isolated Python
-environments. We recommend using venv to work with Tensorflow and
-Pytorch on Taurus. It has been integrated into the standard library
-under the \<a href="<https://docs.python.org/3/library/venv.html>"
-target="\_blank">venv module\</a>. **Conda** is the second way to use a
-virtual environment on the Taurus. \<a
-href="<https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html>"
-target="\_blank">Conda\</a> is an open-source package management system
-and environment management system from the Anaconda.
-
-[Detailed information](Python#Virtual_environment) about using the
-virtual environment.
-
-### \<span style="font-size: 1em;">4.3 Application software availability\</span>
-
-Software created for the purpose of the project should be available for
-all members of the group. The instruction of how to use the software:
-installation of packages, compilation etc should be documented and gives
-the opportunity to comfort efficient and safe work.
-
-### 4.4 Access rights
-
-The concept of **permissions** and **ownership** is crucial in Linux.
-See the
-[HPC-introduction](%PUBURL%/Compendium/WebHome/HPC-Introduction.pdf?t=1602081321)
-slides for the understanding of the main concept. Standard Linux
-changing permission command(i.e `chmod`) valid for Taurus as well. The
-**group** access level contains members of your project group. Be
-careful with 'write' permission and never allow to change the original
-data.
-
-Useful links: [Data Management](DataManagement), [File
-Systems](FileSystems), [Get Started with HPC-DA](GetStartedWithHPCDA),
-[Project Management](ProjectManagement), [Preservation research
-data](PreservationResearchData)
-
-## 5. Data moving
-
-### 5.1 Moving data to/from the HPC machines
-
-To copy data to/from the HPC machines, the Taurus [export
-nodes](ExportNodes) should be used as a preferred way. There are three
-possibilities to exchanging data between your local machine (lm) and the
-HPC machines (hm):\<span> **SCP, RSYNC, SFTP**. \</span>\<span
-style`"font-size: 1em;">Type following commands in the terminal of the local machine. The </span> ==SCP=`
-\<span style="font-size: 1em;"> command was used for the following
-example.\</span>
-
-#### Copy data from lm to hm
-
- scp <file> <zih-user>@taurusexport.hrsk.tu-dresden.de:<target-location> #Copy file from your local machine. For example: scp helloworld.txt mustermann@taurusexport.hrsk.tu-dresden.de:/scratch/ws/mastermann-Macine_learning_project/
-
- scp -r <directory> <zih-user>@taurusexport.hrsk.tu-dresden.de:<target-location> #Copy directory from your local machine.
-
-#### Copy data from hm to lm
-
- scp <zih-user>@taurusexport.hrsk.tu-dresden.de:<file> <target-location> #Copy file. For example: scp mustermann@taurusexport.hrsk.tu-dresden.de:/scratch/ws/mastermann-Macine_learning_project/helloworld.txt /home/mustermann/Downloads
-
- scp -r <zih-user>@taurusexport.hrsk.tu-dresden.de:<directory> <target-location> #Copy directory
-
-### 5.2 Moving data inside the HPC machines. Datamover
-
-The best way to transfer data inside the Taurus is the \<a
-href="DataMover" target="\_blank">datamover\</a>. It is the special data
-transfer machine provides the best data speed. To load, move, copy etc.
-files from one file system to another file system, you have to use
-commands with **dt** prefix, such as: **\<span>dtcp, dtwget, dtmv, dtrm,
-dtrsync, dttar, dtls. \</span>**\<span style="font-size: 1em;">These
-commands submit a job to the data transfer machines that execute the
-selected command. Except for the '\</span>\<span style="font-size:
-1em;">dt'\</span>\<span style="font-size: 1em;"> prefix, their syntax is
-the same as the shell command without the '\</span>\<span
-style="font-size: 1em;">dt\</span>\<span style="font-size:
-1em;">'\</span>**.**
-
-Keep in mind: The warm_archive is not writable for jobs. However, you
-can store the data in the warm archive with the datamover.
-
-Useful links: [Data Mover](DataMover), [Export Nodes](ExportNodes)
-
-## 6. Use of hardware
-
-To run the software, do some calculations or compile your code compute
-nodes have to be used. Login nodes which are using for login can not be
-used for your computations. Submit your tasks (by using
-[jobs](https://en.wikipedia.org/wiki/Job_(computing))) to compute nodes.
-The [SLURM](Slurm) (scheduler to handle your jobs) is using on Taurus
-for this purposes. [HPC
-Introduction](%PUBURL%/Compendium/WebHome/HPC-Introduction.pdf) is a
-good resource to get started with it.
-
-### 6.1 What do I need a CPU or GPU?
-
-The main difference between CPU and GPU architecture is that a CPU is
-designed to handle a wide range of tasks quickly, but are limited in the
-concurrency of tasks that can be running. While GPUs can process data
-much faster than a CPU due to massive parallelism (but the amount of
-data which single GPU's core can handle is small), GPUs are not as
-versatile as CPUs.
-
-### 6.2 Selection of suitable hardware
-
-Available [hardware](HardwareTaurus): Normal compute nodes (Haswell\[
-[64,128,256](SystemTaurus#Run_45time_and_Memory_Limits)\], Broadwell,
-[Rome](RomeNodes)), Large [SMP nodes](SDFlex), Accelerator(GPU) nodes:
-(gpu2 partition, [ml partition](Power9)).
-
-The exact partition could be specified by `-p` flag with the srun
-command or in your batch job.
-
-Majority of the basic task could be done on the conventional nodes like
-a Haswell. SLURM will automatically select a suitable partition
-depending on your memory and --gres (gpu) requirements. If you do not
-specify the partition most likely you will be addressed to the Haswell
-partition (1328 nodes in total).
-
-#### Parallel jobs:
-
-**MPI jobs**: For MPI jobs typically allocates one core per task.
-Several nodes could be allocated if it is necessary. SLURM will
-automatically find suitable hardware. Normal compute nodes are perfect
-for this task.
-
-**OpenMP jobs**: An SMP-parallel job can only run **within a node**, so
-it is necessary to include the options **-N 1** and **-n 1**. Using
---cpus-per-task N SLURM will start one task and you will have N CPUs.
-The maximum number of processors for an SMP-parallel program is 896 on
-Taurus ( [SMP](SDFlex) island).
-
-**GPUs** partitions are best suited for **repetitive** and
-**highly-parallel** computing tasks. If you have a task with potential
-[data
-parallelism](https://en.wikipedia.org/wiki/Data_parallelism#:~:text=Data%20parallelism%20is%20parallelization%20across,on%20each%20element%20in%20parallel.)
-most likely that you need the GPUs. Beyond video rendering, GPUs excel
-in tasks such as machine learning, financial simulations and risk
-modelling. Use the gpu2 and ml partition only if you need GPUs!
-Otherwise using the x86 partitions (e.g Haswell) most likely would be
-more beneficial.
-
-**Interactive jobs**: SLURM can forward your X11 credentials to the
-first (or even all) node for a job with the --x11 option. To use an
-interactive job you have to specify -X flag for the ssh login.
-
-### 6.3 Interactive vs. sbatch
-
-However, using srun directly on the shell will lead to blocking and
-launch an interactive job. Apart from short test runs, it is
-**recommended to launch your jobs into the background by using batch
-jobs**. For that, you can conveniently put the parameters directly into
-the job file which you can submit using `sbatch` \[options\] \<job
-file>.
-
-### 6.4 Processing of data for input and output
-
-Pre-processing and post-processing of the data is a crucial part for the
-majority of data-dependent projects. The quality of this work influence
-on the computations. However, pre- and post-processing in many cases can
-be done completely or partially on a local pc and then
-[transferred](TypicalProjectSchedule#A_5._Data_moving) to the Taurus.
-Please use Taurus for the computation-intensive tasks.
-
-Useful links: [Batch Systems](BatchSystems), [Hardware
-Taurus](HardwareTaurus), [HPC-DA](HPCDA), [Slurm](Slurm)
-
-## 7. Use of specific software (packages, libraries, etc)
-
-### 7.1 Modular system
-
-The modular concept is the easiest way to work with the software on
-Taurus. It allows to user to switch between different versions of
-installed programs and provides utilities for the dynamic modification
-of a user's environment. The information can be found
-[here](RuntimeEnvironment#Modules).
-
-#### Private project and user modules files
-
-[Private project module
-files](RuntimeEnvironment#Private_Project_Module_Files)\<span
-style="font-size: 1em;"> allow you to load your group-wide installed
-software into your environment and to handle different versions. It
-allows creating your own software environment for the project. You can
-create a list of modules that will be loaded for every member of the
-team. It gives opportunity on unifying work of the team and defines the
-reproducibility of results. Private modules can be loaded like other
-modules with \</span>\<span class="WYSIWYG_TT">module load\</span>\<span
-style="font-size: 1em;">.\</span>
-
-[Private user module
-files](RuntimeEnvironment#Private_User_Module_Files) allow you to load
-your own installed software into your environment. It works in the same
-manner as to project modules but for your private use.
-
-### 7.2 Use of containers
-
-[Containerization](https://www.ibm.com/cloud/learn/containerization)
-encapsulating or packaging up software code and all its dependencies to
-run uniformly and consistently on any infrastructure. On Taurus
-[Singularity](https://sylabs.io/) used as a standard container solution.
-Singularity enables users to have full control of their environment.
-This means that you dont have to ask an HPC support to install anything
-for you - you can put it in a Singularity container and run! As opposed
-to Docker (the most famous container solution), Singularity is much more
-suited to being used in an HPC environment and more efficient in many
-cases. Docker containers can easily be used in Singularity. Information
-about the use of Singularity on Taurus can be found [here](Container).
-
-\<span style="font-size: 1em;">In some cases using Singularity requires
-a Linux machine with root privileges (e.g. using the ml partition), the
-same architecture and a compatible kernel. For many reasons, users on
-Taurus cannot be granted root permissions. A solution is a Virtual
-Machine (VM) on the ml partition which allows users to gain root
-permissions in an isolated environment. There are two main options on
-how to work with VM on Taurus:\<br />\</span>\<span style="font-size:
-1em;">1. \</span> [VM tools](VMTools)\<span style="font-size: 1em;">.
-Automative algorithms for using virtual machines;\<br />\</span>\<span
-style="font-size: 1em;">2. \</span> [Manual method](Cloud)\<span
-style="font-size: 1em;">. It required more operations but gives you more
-flexibility and reliability.\<br />\</span>\<span style="font-size:
-1em;">Additional Information: Examples of the definition for the
-Singularity container (\</span>
-[here](SingularityExampleDefinitions)\<span style="font-size: 1em;">)
-and some hints (\</span> [here](SingularityRecipeHints)\<span
-style="font-size: 1em;">).\</span>
-
-Useful links: [Containers](Container), [Custom EasyBuild
-Environment](CustomEasyBuildEnvironment), [Cloud](Cloud)
-
-## 8. Structuring experiments
-
-- \<p>Input data\</p>
-- \<p>Calculation results\</p>
-- \<p>Log files\</p>
-- \<p>Submission scripts (examples / code for survival)\</p>
-
-## What if everything didn't help?
-
-### Create a ticket: how do I do that?
-
-The best way to ask about the help is to create a ticket. In order to do
-that you have to write a message to the <hpcsupport@zih.tu-dresden.de>
-with a detailed description of your problem. If it possible please add
-logs, used environment and write a minimal executable example for the
-purpose to recreate the error or issue.
-
-### \<span style="font-size: 1em;">Communication with HPC support\</span>
-
-There is the HPC support team who is responsible for the support of HPC
-users and stable work of the cluster. You could find the
-[details](https://tu-dresden.de/zih/hochleistungsrechnen/support) in the
-right part of any page of the compendium. However, please, before the
-contact with the HPC support team check the documentation carefully
-(starting points: [ main page](WebHome), [HPC-DA](HPCDA)), use a
-[search](WebSearch) and then create a ticket. The ticket is a preferred
-way to solve the issue, but in some terminable cases, you can call to
-ask for help.
-
-Useful link: [Further Documentation](FurtherDocumentation)
-
-\<span style="font-size: 1em;">-- Main.AndreiPolitov -
-2020-09-14\</span>