Cannot start singularity v1.2.2
singularity run -B /projects,/group -B $path/rstudio-server/run:/var/run/rstudio-server -B $path/rstudio-server/lib/:/var/lib/rstudio-server --contain --writable-tmpfs --app rserver /group/dcgc/sequencing_processed/support/pipeline/singularity/singularity-single-cell.v1.2.2.sif 9001
WARNING: While bind mounting '/group:/group': destination is already in the mount point list
WARNING: While bind mounting '/projects:/projects': destination is already in the mount point list
Run 'mamba init' to be able to run mamba activate/deactivate
and start a new shell session. Or use conda to activate/deactivate.
## Current env is >>
sed: couldn't open temporary file /rstudio-server-conda/local/sed8taxgr: Permission denied
TTY detected. Printing informational message about logging configuration. Logging configuration loaded from '/etc/rstudio/logging.conf'. Logging to '/home/sequencing/kasa397b/.local/share/rstudio/log/rserver.log'.
rserver[3060774]: ERROR system error 13 (Permission denied) [path: /rstudio-server-conda/local/rstudio-server, target-dir: ]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const src/cpp/shared_core/FilePath.cpp:846; LOGGED FROM: int main(int, char* const*) src/cpp/server/ServerMain.cpp:659
2023-03-22T08:56:17.312747Z [rserver] ERROR system error 13 (Permission denied) [path: /rstudio-server-conda/local/rstudio-server, target-dir: ]; OCCURRED AT rstudio::core::Error rstudio::core::FilePath::createDirectory(const string&) const src/cpp/shared_core/FilePath.cpp:846; LOGGED FROM: int main(int, char* const*) src/cpp/server/ServerMain.cpp:659